Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0997
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    32   0.30 
AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    27   6.5  

>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 181 PQHNATAQTSPPLLHHHHRR 240
           P+HN  A T+PP  HHHH +
Sbjct: 37  PRHNLYAPTAPPHHHHHHHQ 56


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 371 PPSSEKVPRMSSPCRACSKYPRKVSSGSLPAITTSTLSPELRSA 240
           PP S  V ++ SP    S  PRK +  SL  +T+S  S  + +A
Sbjct: 2   PPGSSDVQKLGSPTLRSSCVPRKKTRSSLLVLTSSNPSKSMNNA 45


>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 513 AIRQLAKGGCAARRLSWVTPGFSQSPRCKTTAS--EL*YDSL*GELGTGPPLERESPENV 340
           A+R  A    ++ RLS +T   S SPR +   S  E     L   LGT P +E    +N 
Sbjct: 179 ALRSSAPAPTSSARLSPITVSTSGSPRAQLAISPQEKPPQKLSINLGTSPMIEEFCEQNS 238

Query: 339 VSLPGLQQ 316
            +LP   Q
Sbjct: 239 ATLPNTDQ 246


>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 326 AC-SKYPRKVSSGSLPAITTSTLSPELRSARRW*WCRSGGEVCAVALCCGI 177
           AC +  P   + G + A+TT+  S   +  + W   R  GEVC  A+  G+
Sbjct: 319 ACETSLPNVFACGDVCALTTTEPSTLWQQRQLWTQARQQGEVCGRAMVAGV 369


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 437 HVVKRRPVNCNTT--HYRANWVPGPPSSE 357
           H V RR V  + T  H+ ANW+ G PS+E
Sbjct: 235 HAVTRRGVMMDMTNVHFDANWLSGYPSAE 263


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -2

Query: 380  VPGPPSSEKVPRMSSPCRACSKYPRKVSSGSLPAITTSTL-SPELRSARRW*WCRSGGEV 204
            +P PP     P    P  A S  P   ++ + P+I  ST  + E  S+    W   G  V
Sbjct: 825  LPPPPPPNPPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEASEEESSGSMLWIIIGAVV 884

Query: 203  CAVALCCGIMSRQALSGAPVERASDTRDVITNITT 99
              + +   ++  + +   P E    T  + T  TT
Sbjct: 885  VVLIILVILLYLKCMRKEPKE--DPTVSIATTTTT 917


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,357
Number of Sequences: 27780
Number of extensions: 230083
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)