Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0997
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 535 GDRCGPLRYTPAGERGMCCKAIKLGNARVFPVTTL*NDGQ*IVIRLTIGRIGYRAPPRAR 356
           G +  P+R     E G      KLG  R+  V T   + +   +RL  G   + +    R
Sbjct: 15  GGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTR 74

Query: 355 KSR 347
           K+R
Sbjct: 75  KTR 77


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 428 KRRPVNCNTTHYRANWVPGP 369
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 187 HNATAQTSPPLLHHHHR 237
           H       PP  HHHH+
Sbjct: 341 HTMGPTMGPPHHHHHHQ 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,894
Number of Sequences: 438
Number of extensions: 2808
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)