Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0997
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41770.1 68415.m05163 expressed protein contains Pfam domain ...    30   1.1  
At1g27020.1 68414.m03294 expressed protein                             28   4.6  
At2g20585.2 68415.m02406 expressed protein                             27   6.1  
At2g20585.1 68415.m02405 expressed protein                             27   6.1  
At5g21940.1 68418.m02547 expressed protein supported by full len...    27   8.0  
At3g60850.1 68416.m06807 expressed protein                             27   8.0  
At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    27   8.0  

>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 771

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -2

Query: 311 PRKVSSGSLPAITTSTLSPELRSARRW*WCRSGGEVCAVALCCGIMSRQAL 159
           PRK+ S  L    T T+S E+ +  R  W ++ G V  V  C G + R AL
Sbjct: 487 PRKLPSVHLGVEETGTVSTEIGNLIR--WRKNFGNVVLVMFCNGPVERTAL 535


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 443 WENPGVTQLNRLAAHPPFASWRI 511
           WE P  T  N+LA    FA+W +
Sbjct: 163 WEKPTSTDFNQLAKESEFAAWTL 185


>At2g20585.2 68415.m02406 expressed protein
          Length = 100

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +1

Query: 70  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPL 219
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP L
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLL 50


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +1

Query: 70  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPL 219
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP L
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLL 50


>At5g21940.1 68418.m02547 expressed protein supported by full length
           cDNA GI:22531282 from [Arabidopsis thaliana]
          Length = 264

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 109 LVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPLLHHHHR 237
           L +   V+    TG   S+  D  P  + T   SPP   HHH+
Sbjct: 166 LTLAMAVAAGVMTGEGSSSGGDSSPGSSPTTSGSPPRQLHHHQ 208


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 DMMPQHNATAQTSPPLLHHHH 234
           D+ P  +   Q+ P +LHHHH
Sbjct: 15  DLDPTADILVQSPPSILHHHH 35


>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -2

Query: 422 RPVNCNTTHYRANWVPGPPSSEKVPRMSS------PCRACSKYPRKVSSGS 288
           R +N  T+  R++ V  P SS  +P +        PCR CS  P   SS +
Sbjct: 18  RKINPVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYVPLSSSSSA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,526
Number of Sequences: 28952
Number of extensions: 220476
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)