Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0996
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.9  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   6.7  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   6.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.8  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 185  TKAQYCTHF*FLYLTLFVLIVMFVLCTTIYIPNNKYLYFDIIIRTYKYSDFL-YLSLNSV 9
            T   + TH+ + ++T+F L    V+C  IY P +++ + D  +    Y +FL +LS  + 
Sbjct: 1434 TMTVWTTHYVYFWVTMFAL----VICPFIYNP-HQFSFVDFFV---DYREFLRWLSRGNT 1485

Query: 8    K 6
            K
Sbjct: 1486 K 1486


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 213 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 103
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 213 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 103
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 201 LAVLQNKGPIL-HPFLVFISHFV 136
           LA L +  P++ H  ++F+SHFV
Sbjct: 712 LAALSDASPLVRHELVIFLSHFV 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,414
Number of Sequences: 5004
Number of extensions: 47489
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)