Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0996
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    31   0.74 
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    29   2.3  
09_04_0452 - 17710180-17710968                                         29   3.9  
03_03_0237 + 15706391-15706699                                         27   9.1  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 478 NMSLLSANGVIMIGVKSSKDPRAGIQNGFWAIK 576
           N    +   +IM G+K  KDPR  I +G W  K
Sbjct: 87  NFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK 119


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 417 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEV 265
           FPG SP+   +  F QN    + L +P      +   ++ S  A I+RE++
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDM 522


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 478 NMSLLSANGVIMIGVKSSKDPRAGIQNGFWAIKYLLVI 591
           N   L   G +++G+  SKD  AG+ NG + + + L+I
Sbjct: 157 NAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLII 194


>03_03_0237 + 15706391-15706699
          Length = 102

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 260 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPG 415
           N +S+ +  A  LVL+ +   + L+ G+  E+ +    ++A D+T  G++ G
Sbjct: 4   NKSSNSISIAFFLVLIILASQVMLSHGIPLEMHRRYLLSHAADAT-KGVMEG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,664
Number of Sequences: 37544
Number of extensions: 259435
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)