Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0996
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 37 0.011
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 36 0.020
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 33 0.14
SB_58184| Best HMM Match : DUF1545 (HMM E-Value=3.6) 30 1.3
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 1.7
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15) 29 3.0
SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6) 28 7.0
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18) 28 7.0
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95) 28 7.0
SB_58031| Best HMM Match : DB (HMM E-Value=1.5) 27 9.3
SB_10749| Best HMM Match : DB (HMM E-Value=1.5) 27 9.3
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 272 SRLMYALMLVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVG 448
SR Y L L + ++ ITL P + + K+P+ C T + CD VG
Sbjct: 773 SRFFYVLFLCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVG 821
Query: 449 YLAVYRITFA 478
Y A YRI FA
Sbjct: 822 YSAAYRIYFA 831
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 505 VIMIGVKSSKDPRAGIQNGFWAIK 576
++ V S+K RA I NGFW IK
Sbjct: 841 ILTYNVSSTKQFRARIHNGFWYIK 864
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 508 IMIGVKSSKDPRAGIQNGFWAIKYLLVI 591
++IGV++ +D RA NGFW IK LL++
Sbjct: 518 VLIGVRNEEDVRAKFHNGFWYIKILLLL 545
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 505 VIMIGVKSSKDPRAGIQNGFWAIKY 579
V++ V++ DPRA IQNG W +K+
Sbjct: 414 VVLYNVRTYADPRALIQNGLWVVKF 438
>SB_58184| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 251
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 543 SWNSKWFLGHQIFIGYLVALSE 608
S S+W LGH + IGYL A++E
Sbjct: 167 SMQSEWHLGHAVRIGYLDAIAE 188
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 309 VTSTSISAYIRREEVELVQMDMLNNIVNKQCC 214
+ IS Y + E ELV D + N+V CC
Sbjct: 198 IAGADISTYSQNGEWELVSADAVRNVVKYSCC 229
>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
Length = 1366
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 213 HSNTLAVLQNKGPI-LHPFLVFISHFVCVDCDVCFM 109
HS ++ K PI F V+I+HF C D +CF+
Sbjct: 422 HSESIG--NKKSPIETDAFEVYINHFTCTDTALCFI 455
>SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6)
Length = 173
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +2
Query: 155 TKNGCSIGPLFCSTASVLLWQHCLFTMLFSMSICTNSTSSRLMYALMLVLVTIVCCITLA 334
T G S P +C+ +C T ++ CT + SS + Y TI C +L
Sbjct: 81 TFTGSSTIP-YCTFTGSSTIPYCTITGSSTIPYCTFTGSSTIPYCTFTGSSTIPYCTSLG 139
Query: 335 PGLH----NELQKLPFCTNATDSTV 397
P LH +P+CT S V
Sbjct: 140 P-LHYCTFTGSSTIPYCTFTGPSAV 163
>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
Length = 542
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 543 SWNSKWFLGHQIFIGYLVALSE 608
S S+W LGH IGYL A++E
Sbjct: 421 SMQSEWQLGHAGLIGYLDAIAE 442
>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
Length = 164
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 269 SSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNF 421
S+R+++ L+ +V IVC + GL+ + P N T++ + G+ G F
Sbjct: 38 SARVVFILLGWIVAIVCGLASLYGLYKNFRTHPEPFNMTENVIYGVF-GRF 87
>SB_58031| Best HMM Match : DB (HMM E-Value=1.5)
Length = 297
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 324 IQHTIVTSTSISAYIRREEVELVQMDMLNNIVNKQCC 214
+QH + TSI+ + + + + +N NK CC
Sbjct: 36 LQHCDIPGTSINGFCKLKRIATTNKSDADNSYNKACC 72
>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
Length = 616
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 324 IQHTIVTSTSISAYIRREEVELVQMDMLNNIVNKQCC 214
+QH + TSI+ + + + + +N NK CC
Sbjct: 250 LQHCDIPGTSINGFCKLKRIATTNKSDADNSYNKACC 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,715,159
Number of Sequences: 59808
Number of extensions: 348064
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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