Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0996
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 46 2e-05
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = +2
Query: 260 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 439
NST++R+MYALML+ T + + L PG+ +L + + + + V+C+
Sbjct: 35 NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYA--------GVNCEH 86
Query: 440 AVGYLAVYRI 469
A+GY AVYR+
Sbjct: 87 AIGYQAVYRV 96
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 505 VIMIGVKSSKDPRAGIQNGFWAIKYLLV 588
++M GV SSKD R+ IQNGFW KYLL+
Sbjct: 109 LLMFGVSSSKDGRSSIQNGFWFFKYLLM 136
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 188 CSTASVLLWQHCLFTMLFSMSICT-NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QK 361
C+ +S + ++ S+ T +ST++R+MYA +L T + CI L PG+ N+L +
Sbjct: 10 CAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAEN 69
Query: 362 LPFCTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFAT 481
FC + + C A G+ AVYR+ AT
Sbjct: 70 KWFCEGLNEYA---------GISCAHATGFQAVYRVCAAT 100
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 188 CSTASVLLWQHCLFTMLFSMSICT-NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QK 361
C+ +S + ++ S+ T +ST++R+MYA +L T + CI L PG+ N+L +
Sbjct: 10 CAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAEN 69
Query: 362 LPFCTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFAT 481
FC + + C A G+ AVYR+ AT
Sbjct: 70 KWFCEGLNEYA---------GISCAHATGFQAVYRVCAAT 100
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 505 VIMIGVKSSKDPRAGIQNGFWAIKYLLV 588
+IMIGVK SKD R+ IQNGFW KYL++
Sbjct: 109 LIMIGVKDSKDGRSSIQNGFWFFKYLIL 136
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 206 LLWQHCLFTMLFSMSIC-TNSTSSRLMYALMLVLVTIVCCITLA-PGLHNELQKLPFCTN 379
LL HC ++F + + TNS++SRL A V + I+ I ++ LH +++++ +
Sbjct: 415 LLSGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQIERMQASQS 474
Query: 380 ATDSTVTGLLPG 415
+ V+ L G
Sbjct: 475 GLNLFVSRFLSG 486
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 206 LLWQHCLFTMLFSMSIC-TNSTSSRLMYALMLVLVTIVCCITLA-PGLHNELQKLPFCTN 379
LL HC ++F + + TNS++SRL A V + I+ I ++ LH +++++ +
Sbjct: 418 LLSGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQIERMQASQS 477
Query: 380 ATDSTVTGLLPG 415
+ V+ L G
Sbjct: 478 GLNLFVSRFLSG 489
>Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 258 VQMDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 88
+ ++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 206 MDVEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical
protein T05A1.1b protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 258 VQMDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 88
+ ++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 163 MDVEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 215
>Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 258 VQMDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 88
+ ++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 206 MDVEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical
protein F20E11.12 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -1
Query: 115 FYVLQFTFQITSICILILLYALINIQIFY 29
F++L + TSICIL++L +L++ Q+F+
Sbjct: 186 FFLLDLDGKYTSICILLMLSSLVS-QMFW 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,755
Number of Sequences: 27780
Number of extensions: 265056
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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