Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0996
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    39   0.002
At3g06170.1 68416.m00709 TMS membrane family protein / tumour di...    30   1.4  
At4g17550.1 68417.m02624 transporter-related similar to cAMP ind...    28   4.3  

>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 478 NMSLLSANGVIMIGVKSSKDPRAGIQNGFWAIKYLLVIW 594
           N    S   V+MIGVK+ KDPR GI +G W +K  ++ W
Sbjct: 87  NFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMK--IICW 123


>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 478 NMSLLSANGVIMIGVKSSKDPRAGIQNGFWAIKYLLVIWW 597
           N    +   +IMIGVK   D R    +G W +K  +++W+
Sbjct: 84  NFLFFAIYALIMIGVKDQNDRRDSWHHGGWGLK--MIVWF 121


>At4g17550.1 68417.m02624 transporter-related similar to cAMP
           inducible 2 protein [Mus musculus] GI:4580997, glycerol
           3-phosphate permease [Homo sapiens] GI:7543982; contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 544

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 164 GCSIGPLFCSTASVLLWQHCLFTMLFSMSICTNSTSSRLMYA 289
           G ++GPL     S L WQ  +F ML   ++C     +RL+ A
Sbjct: 480 GAALGPLLTGFLSTLGWQ-AVFYMLVVGALCAGLLLTRLVIA 520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,159
Number of Sequences: 28952
Number of extensions: 229240
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)