Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0993
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   3.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.5  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   8.5  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 389 NKPAYSVWATFNVTHKRFSMSDRFYKRNRSTVTISEI 499
           N+PA+ VW  F+    R S    F +  RS+V + E+
Sbjct: 437 NEPAFGVWLIFDSVDNRAS---DFVRSMRSSVILEEV 470


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 195 LLGACFKSLTAMLLDYCYQPRFNCREPL*ILMLIFKQLIY 76
           L+G     +TA+LL Y Y  R+   E   IL++ +    +
Sbjct: 242 LIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYFF 281


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -3

Query: 587 ILLKTPTALHSETSYNTIKYS 525
           I+  +P+++H E ++NT+KY+
Sbjct: 364 IVCVSPSSVHYEETHNTLKYA 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,988
Number of Sequences: 5004
Number of extensions: 42007
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)