Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0993
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.0  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 398 RVCLGESLPLVLI 360
           R+C+GE++P+ LI
Sbjct: 328 RICIGETMPMELI 340


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 182 HAPNNYINGSFFQTRFESNNF 244
           H  NNY N ++    + +NN+
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNY 111


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 NFKM*ESHTHAILKGKLWLSIDGKNRNNCSPVN 337
           N ++ +   HA++ GKL     GK +    P N
Sbjct: 172 NSEVLQKANHALIFGKLDTKTSGKYKEYIIPAN 204


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 NFKM*ESHTHAILKGKLWLSIDGKNRNNCSPVN 337
           N ++ +   HA++ GKL     GK +    P N
Sbjct: 172 NSEVLQKANHALIFGKLDTKTSGKYKEYIIPAN 204


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 362 LILMVDFHPNKPAYSVWATFN 424
           ++  ++ HPN   YS   TFN
Sbjct: 173 IVFHLETHPNVTWYSQCVTFN 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,082
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)