Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0990
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 192 4e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 89 5e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 8e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 3e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 41 1e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.29
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 6.3
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 192 bits (467), Expect = 4e-50
Identities = 93/119 (78%), Positives = 98/119 (82%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYAFRSVPPGIVL 585
VAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+P + VLSLYA GIVL
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYA-SGRTTGIVL 153
Score = 87.8 bits (208), Expect = 1e-18
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +2
Query: 128 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGI 43
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (256), Expect = 2e-24
Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +1
Query: 268 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 444
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 445 APLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYAFRSVPPGIVL 585
PL N+EK+ + +ET N P + +PVL+LYA + GIVL
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYA-SARTTGIVL 158
Score = 53.2 bits (122), Expect = 3e-08
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERV 47
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 45/105 (42%), Positives = 72/105 (68%)
Frame = +1
Query: 271 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 450
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 451 LNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYAFRSVPPGIVL 585
+NP ANREKM + MFE + + VLSLYA + + G+V+
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA-QGLSSGVVV 153
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 134 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 238
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 89.0 bits (211), Expect = 5e-19
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 450
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 451 LNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
LNP NRE +IMFE+FN + VL+L A
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAA 167
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 229
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 8e-11
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +1
Query: 250 REVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 426
R+ + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 427 PVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLY-AFRSVPPGIVLGL 591
P+ +TE NP R MT+++FE +N+P + S Y + GIVL L
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNL 172
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 241
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +1
Query: 316 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 495
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 496 ETFNSP 513
E+ P
Sbjct: 123 ESLRCP 128
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 131 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 232
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.4 bits (105), Expect = 3e-06
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 271 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 444
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 445 APLNPKANREKMTQIMFETFNSP 513
NP++ R+++ + FE + P
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVP 131
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 131 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 232
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.1 bits (92), Expect = 1e-04
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 331 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 498
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 499 TFNSPPCTSPSKPVLSLYAFRSVPPGIVLGL 591
P T +P++ LYA + G+V+ +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAI-GILHGLVIDI 201
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 391 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSP 513
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 176 KAGFAGDDAP-RAVFPSIVGRPRHQGVRSVWD 268
KA F+G R+ + VG+P H G+ S WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 433 LLTEAPLNPKANREKMTQIMFETFN 507
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 173 TYRSHCLLPTRQLLRRTS*ISEI 105
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 436 LTEAPLNPKANREKMTQIMFETFNSPPCTSPS 531
L L PK+N +M+ ++ T N P T+PS
Sbjct: 141 LDNGSLCPKSNHIRMSTLISFTCNRDPYTAPS 172
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 542 STGLDGDVHGGLLNVSNMIWVIFSLLAL 459
S GL+G L + N+++ IF+ LAL
Sbjct: 375 SVGLEGASEESLAKIENLVYSIFNDLAL 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,242
Number of Sequences: 5004
Number of extensions: 56815
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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