Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0990
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 7e-52
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 7e-52
SB_56| Best HMM Match : Actin (HMM E-Value=0) 200 7e-52
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 200 7e-52
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 7e-52
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 7e-21
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 75 6e-14
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 62 3e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 59 3e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 8e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.076
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.53
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 29 3.8
SB_51279| Best HMM Match : Filament (HMM E-Value=0.092) 28 5.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_44488| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) 27 8.7
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1) 27 8.7
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 8.7
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 200 bits (488), Expect = 7e-52
Identities = 94/109 (86%), Positives = 96/109 (88%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP + VLSLYA
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 145
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/44 (93%), Positives = 43/44 (97%)
Frame = +2
Query: 122 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 44
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 200 bits (488), Expect = 7e-52
Identities = 94/109 (86%), Positives = 96/109 (88%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP + VLSLYA
Sbjct: 96 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 144
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/42 (92%), Positives = 42/42 (100%)
Frame = +2
Query: 128 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 43
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 200 bits (488), Expect = 7e-52
Identities = 94/109 (86%), Positives = 96/109 (88%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP + VLSLYA
Sbjct: 96 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 144
Score = 89.8 bits (213), Expect = 1e-18
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = +2
Query: 128 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 43
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 200 bits (488), Expect = 7e-52
Identities = 94/109 (86%), Positives = 96/109 (88%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP + VLSLYA
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 145
Score = 95.9 bits (228), Expect = 2e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 122 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 44
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 200 bits (488), Expect = 7e-52
Identities = 94/109 (86%), Positives = 96/109 (88%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 408
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP + VLSLYA
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 145
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +2
Query: 122 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 44
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 97.5 bits (232), Expect = 7e-21
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Frame = +1
Query: 244 SGREVG-MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAP 417
S ++VG + KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 43 SSQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDP 102
Query: 418 EEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYAFRSVPPGIVL 585
VLLTE PLNP NREKM ++MFE + + VL+LYA + + G+V+
Sbjct: 103 RNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYA-QGLLTGVVI 157
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 140 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVRSVWD 268
+ +V DNG+G K G+AG + P +FPS+VGRP + + V D
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 97.1 bits (231), Expect = 9e-21
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +1
Query: 229 GKAPPSGREVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 393
G+ G VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 89.8 bits (213), Expect = 1e-18
Identities = 39/42 (92%), Positives = 42/42 (100%)
Frame = +2
Query: 128 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 253
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV 43
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +1
Query: 466 NREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
N + M +IMFETFNSP + VLSLYA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYA 107
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 74.5 bits (175), Expect = 6e-14
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +1
Query: 373 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLY 552
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P + V++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 553 A 555
A
Sbjct: 2189 A 2189
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVRSVWDR 271
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+ +D+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHKMWEHAFDQ 2138
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +1
Query: 421 EHPVLLTEAPLNPKANREKMTQIMFETFNSPPCTSPSKPVLSLYA 555
+HPVLLTEAPLNP+ NREK ++ FETFN P + VLSLYA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYA 170
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 131 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 247
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +1
Query: 331 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 510
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 511 PPCTSPSKPVLSLYA 555
P VL+ +A
Sbjct: 63 PAFFLCKNSVLTAFA 77
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 259 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 438
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 116 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 241
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -2
Query: 244 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 128
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.076
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 280 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 402
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 134 EVAALVVDNGSGMCKAGFAGDDAPRAV 214
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 127 AHLELVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQ 2
A L L+KL CRC K +R + + + IP C C+++
Sbjct: 1296 APLSLLKLTTCRCVKTACRRDDLCSCKANDIPCTEACLCTSE 1337
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 322 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 474
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 219 GNTARGASSPAKPALHIPEPLSTT 148
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 219 GNTARGASSPAKPALHIPEPLSTT 148
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 219 GNTARGASSPAKPALHIPEPLSTT 148
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 115 LVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 11
L++L C C+K + KR + + Q+P C C
Sbjct: 620 LLELTTCSCEKSRCKRDDLCPCKSNQMPCTEACQC 654
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -2
Query: 220 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 86
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 487 IMFETFNSPPCTSPSKPVLSLYA 555
IMFE FNSP + VLSLYA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYA 23
>SB_51279| Best HMM Match : Filament (HMM E-Value=0.092)
Length = 778
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 469 REKMTQIMFETF---NSPPCTSPSKPVLSLYAFRSVPPG 576
RE++ Q+M ETF S KPVLS Y RS PPG
Sbjct: 483 RERLAQLMMETFQRLESDTGIFLIKPVLS-YQGRSDPPG 520
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 219 GNTARGASSPAKPALHIPEPLSTT 148
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 219 GNTARGASSPAKPALHIPEPLSTT 148
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_44488| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
Length = 194
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 351 DDSVFDGVFEGQDTSFALCLISYIRVLLSHTDLTP*WRGLPTIEGNTARGASSPAKPALH 172
DD D +G+ LC +Y+ L+ H D+ + + I A G S P
Sbjct: 87 DDDDDDDDDDGRVVVIVLCHTTYLTYLIRHDDVMYCFSPVVAITAGVAVGFSVTTAPTNQ 146
Query: 171 IPEP-LSTTNAATSSSHI 121
P L+TTN ++ +
Sbjct: 147 QSCPCLATTNQCACATRV 164
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 234 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 124
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
Length = 535
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 257 TSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLL 150
T +P+G + P+ ++ ++ HH + T R HC+L
Sbjct: 107 TEKPNGVSSPKKKK--KKHHHKHEEKHFTDRDHCIL 140
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 239 GAFPRSRETLREEHHLLRSRPCTYRS 162
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +3
Query: 447 SPQPQGQQREDDPDHVRNIQQ-----PAMYVAIQARALAVRVPVRTTRYR 581
S +P+GQ RE+D RN ++ P + Q R A+ P R + R
Sbjct: 1076 SQRPRGQHREEDSSLSRNRREGFTSAPKAFKGAQGRTAALTTPSRDIQVR 1125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,524,374
Number of Sequences: 59808
Number of extensions: 509123
Number of successful extensions: 1480
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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