Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0988
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ21 Cluster: Methylated DNA-protein cysteine methylt...    54   4e-06
UniRef50_A2FX82 Cluster: Starch binding domain containing protei...    33   5.7  
UniRef50_Q8A6R9 Cluster: Conserved protein, with rhomboid family...    33   7.5  
UniRef50_A4CUX5 Cluster: Integrin alpha-subunit domain-like prot...    32   9.9  
UniRef50_Q54F71 Cluster: Putative uncharacterized protein; n=6; ...    32   9.9  

>UniRef50_Q1HQ21 Cluster: Methylated DNA-protein cysteine
           methyltransferase; n=1; Bombyx mori|Rep: Methylated
           DNA-protein cysteine methyltransferase - Bombyx mori
           (Silk moth)
          Length = 136

 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +2

Query: 377 VSSYFV*FTSNTANVNPSHNTAVCIQKLQK 466
           + S F  FTSNTANVNPSHNTAVCIQKLQK
Sbjct: 107 LGSDFQKFTSNTANVNPSHNTAVCIQKLQK 136


>UniRef50_A2FX82 Cluster: Starch binding domain containing protein;
           n=1; Trichomonas vaginalis G3|Rep: Starch binding domain
           containing protein - Trichomonas vaginalis G3
          Length = 984

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 499 YLTSVST*SINYIVSFKLINNIKFLNKITDF*PPASNV 612
           Y  +V T  +NY ++ K ++NI+F+N +T   PP S +
Sbjct: 30  YDNNVQTPQLNYEINLKQLSNIEFINDLTITVPPNSRI 67


>UniRef50_Q8A6R9 Cluster: Conserved protein, with rhomboid family
           domain; n=2; Bacteroides|Rep: Conserved protein, with
           rhomboid family domain - Bacteroides thetaiotaomicron
          Length = 586

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +3

Query: 69  EKVSTCKN*AISGIYTLYRAFLGAYRIKRGKACTLIRARLYFVSF--VYATRS 221
           E +ST  + +I G+Y ++ AFL  +RI+R +   L+ + L FV +  +Y  R+
Sbjct: 263 ETISTGASGSIFGLYGIFLAFLLFHRIERSQRKALLTSILIFVGYNLIYGIRA 315


>UniRef50_A4CUX5 Cluster: Integrin alpha-subunit domain-like
           protein; n=1; Synechococcus sp. WH 7805|Rep: Integrin
           alpha-subunit domain-like protein - Synechococcus sp.
           (strain WH7805)
          Length = 1016

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 347 GFYAPTRNLVTIVDR-SARSIPPLQFTRPLIP*GRQTRAIARERTGSVNKTYKI*SRANE 171
           G  AP R+  T  +  SA  +  L  T P++    Q+ +    RTG +N+T +   R+++
Sbjct: 442 GEAAPQRSATTSTEAGSAEQVTDLLITNPVVNESEQSVSFVITRTGDLNQTIQAIYRSDD 501

Query: 170 RAG 162
           R G
Sbjct: 502 RDG 504


>UniRef50_Q54F71 Cluster: Putative uncharacterized protein; n=6;
            cellular organisms|Rep: Putative uncharacterized protein
            - Dictyostelium discoideum AX4
          Length = 2441

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 597  WLKIGNFVQKFNIIYKFKAYNIVYTSCTYRSKILWPLNCF 478
            +LK+ N V K NI+ K+      +  CTY S ++ P N F
Sbjct: 1253 YLKLTNVVSKINILSKYVDSTTRHYVCTYTSTLVKPKNSF 1292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,540,392
Number of Sequences: 1657284
Number of extensions: 9716802
Number of successful extensions: 19773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19767
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)