Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0988
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.7  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 80  GHFFNLSYLQVFALYFYPPYSE 15
           G  FNL+  QV  LY  PP  E
Sbjct: 391 GKIFNLTTRQVRTLYKLPPNYE 412


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 250 PHGMSGRVNCKGGI 291
           PH + GR  CK G+
Sbjct: 131 PHNLVGREGCKKGV 144


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
          protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 65 LSYLQVFALYFYPPYSEHIS 6
          L+Y+  F L  Y  YS+H S
Sbjct: 3  LAYIACFLLLLYYIYSKHYS 22


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 407 NTANVNPSHNTAVCIQKL 460
           N   VNP  N   C+ K+
Sbjct: 70  NDCKVNPCENGGTCVDKI 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,615
Number of Sequences: 336
Number of extensions: 2563
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)