Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0988
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)                     29   4.1  
SB_21442| Best HMM Match : p450 (HMM E-Value=0)                        28   7.2  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 400 ELNKIRAHISSALLFDETDFMHRPEI*LLLLIEARDL 290
           E NK+RAH+SS      T    R  + L LLI A+DL
Sbjct: 691 ENNKLRAHLSSIQSEISTVIEERDSLKLALLILAKDL 727


>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 360 YLTRRILCTDPKSS---YYC*SKRAIYPAFTVYTAAHSMRKTNTSNRARK 220
           +L     C+ PKS    + C  +  +  AFT     H +R+ N SNRAR+
Sbjct: 477 HLISSATCSYPKSEKRDFDCYPEVFLIYAFTDMYCLHVLREQNDSNRARR 526


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 597 WL-KIGNFVQKFNIIYKFKAYNIVYTSC-TYRSKILWPLNCF 478
           WL K G F +K    Y   A+ +++    TY +  +WPL CF
Sbjct: 276 WLEKNGTFWEKGTQNYFQAAFKMIFFGIRTYSNDKVWPLTCF 317


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 182  RANERAGFPALNPVRS*ERAIECVNAANSLIFT 84
            +  E+ GFP  NP +   R +EC     SL  T
Sbjct: 2496 KTTEKLGFPVHNPYKRYHRGVECKVGVFSLAVT 2528


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 171 LIRARLYFVSFVYATRSFARDCSCLSSS-WNERPCK 275
           +IR R   ++ +Y TRSF   CS  +S  W+ R C+
Sbjct: 487 VIRLRHAKLAEIYETRSFLTPCSVRASGCWSVRGCE 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,888
Number of Sequences: 59808
Number of extensions: 314953
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)