Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0988
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil...    29   2.5  
At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containi...    27   7.8  

>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 910

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 570 KFNIIYKFKAYNIVYTSCTYRSKILWPLNCFFGPY 466
           K+ I+Y+     ++Y S   +S ++W L+ F G Y
Sbjct: 391 KYMIVYRQSLATMLYVSVIMQSILIWVLSVFMGGY 425


>At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 743

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 612 NI*SGWLKIGNFVQKFNIIYKFKAYNIVYTSCTY 511
           N+  G+ K+G+  + F I+   K  N++   CTY
Sbjct: 280 NLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTY 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,341
Number of Sequences: 28952
Number of extensions: 218779
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)