BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0987 (359 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.094 SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 24 8.2 SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 24 8.2 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 30.3 bits (65), Expect = 0.094 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 158 SNCFANESTTGSESRPAEKIRLETQRADAWV 250 S+C +ES ES PA K LE D+W+ Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329 >SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual Length = 165 Score = 23.8 bits (49), Expect = 8.2 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -2 Query: 61 NWKGLRATSKLSI 23 +WKGLR T KL+I Sbjct: 52 DWKGLRVTVKLTI 64 >SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual Length = 165 Score = 23.8 bits (49), Expect = 8.2 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -2 Query: 61 NWKGLRATSKLSI 23 +WKGLR T KL+I Sbjct: 52 DWKGLRVTVKLTI 64 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,209,370 Number of Sequences: 5004 Number of extensions: 19323 Number of successful extensions: 39 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 39 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 110009772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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