Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0987
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0039 - 271926-273503                                             33   0.051
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     27   3.4  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     27   4.4  
06_03_0290 - 19193707-19193752,19193822-19194090                       27   5.9  
03_02_0759 + 10959028-10959135,10959238-10959807                       27   5.9  
03_05_0019 + 19862171-19863049                                         26   7.7  

>02_01_0039 - 271926-273503
          Length = 525

 Score = 33.5 bits (73), Expect = 0.051
 Identities = 25/100 (25%), Positives = 43/100 (43%)
 Frame = -3

Query: 345 LHYMHSALILGAGLGTPVTVLVELDKEVDVHLTHASAR*VSSRIFSAGRDSDPVVDSFAK 166
           L+ MH   +  AGLG P+++ VEL    ++    + AR    R+      +  +V++  +
Sbjct: 164 LNPMHQVNLFTAGLGKPLSIDVELQNTANLQAAMSLARSYEQRLEDDAVAAPRIVENKQR 223

Query: 165 QLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGETGKAF 46
             L              + S  + ++  SPT PG TG  F
Sbjct: 224 SALSFRSAPAPSRVGSSTSSSAAIVASKSPTRPGTTGTRF 263


>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 189 PVVDSFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGET 58
           P    F   +LL     F  A  VV ++H SW  L SP+  G +
Sbjct: 671 PFSSPFMTLVLLKRKAMFDHAPPVVKRAHSSWALLSSPSDDGHS 714


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 152 VVRSPSEALGQLLANPTPLG*AFARPPVLVKLE 54
           + R+ S  LG+LLA+P+PL      P +L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -3

Query: 132 GARAVVSKSHPSWLSLCSPTCPGETGKAFGPP 37
           G     S+  P W   C   C   +  +F PP
Sbjct: 29  GGTPAASRGLPGWPGFCGVGCGSSSSSSFAPP 60


>03_02_0759 + 10959028-10959135,10959238-10959807
          Length = 225

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 132 GARAVVSKSHPSWLSLCSPTCPG 64
           G+ AV   S PS LS CSP  PG
Sbjct: 163 GSTAVERVSPPSILSACSPAPPG 185


>03_05_0019 + 19862171-19863049
          Length = 292

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 77  GEQRLSQEGWDLLTTARAPPKET*QLKSNC 166
           G  +L Q  WD+L+T   PP  T    S C
Sbjct: 119 GAFKLVQTAWDVLSTRHPPPGATAAAASVC 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,008
Number of Sequences: 37544
Number of extensions: 160420
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)