Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0987
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    27   3.0  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   5.2  

>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 68  GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEK 214
           G+VGE++ S++  D++  + AP  E  + ++    ++  T  E   AEK
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETENEEEDDKEKTDKEKLDAEK 212


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 68  GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEK 214
           G+VGE++ S++  D++  + AP  E  + ++    ++  T  E   AEK
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETENEEEDDKEKTDKEKLDAEK 212


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 177 SFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGETG 55
           S +   +  C    GG   + ++SHP W   C+  CP   G
Sbjct: 710 SISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVG 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,840,016
Number of Sequences: 27780
Number of extensions: 118629
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)