Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0987
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 108 SHPSWLSLCSPTCPGETGKAF 46
           SH +W+   S T PG     F
Sbjct: 544 SHGNWIYPASMTIPGSNSAVF 564


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 248 PMHQPAEFLAGSSQRVAIPI 189
           P+H+  +F+ GSS+R  + +
Sbjct: 242 PVHRWYKFIEGSSRRQPVQL 261


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 143 SPSEALGQLLANPTPLG 93
           SPS  +G +   PTP G
Sbjct: 114 SPSPGMGHMGHTPTPNG 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,936
Number of Sequences: 438
Number of extensions: 1352
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)