BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0985 (302 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 115 1e-27 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 62 2e-11 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 48 2e-07 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 2e-05 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 6e-05 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 7e-04 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.001 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.26 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 0.35 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.61 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 1.1 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.2 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 3.2 SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 4.3 SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 5.6 SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 5.6 SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.5 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 115 bits (277), Expect = 1e-27 Identities = 51/60 (85%), Positives = 57/60 (95%) Frame = +1 Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV DE ++K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Score = 37.1 bits (82), Expect = 6e-04 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = +3 Query: 255 AQSKRGILTLKYPIEH 302 AQSKRGILTLKYPIEH Sbjct: 58 AQSKRGILTLKYPIEH 73 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 61.7 bits (143), Expect = 2e-11 Identities = 27/50 (54%), Positives = 35/50 (70%) Frame = +1 Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DE 255 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V E Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 48.4 bits (110), Expect = 2e-07 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = +1 Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYV*DEHRA 264 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD V DE A Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 42.3 bits (95), Expect = 2e-05 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = +1 Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 246 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 40.3 bits (90), Expect = 6e-05 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +1 Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 36.7 bits (81), Expect = 7e-04 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 35.9 bits (79), Expect = 0.001 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 201 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 0.26 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -2 Query: 250 LIHKSPSVPYRPSRPDGGAFPRSRGTR 170 LI K+PS PY SRP A S TR Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 27.9 bits (59), Expect = 0.35 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -1 Query: 251 SHT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135 S+T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 27.1 bits (57), Expect = 0.61 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = -1 Query: 245 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87 T S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 26.2 bits (55), Expect = 1.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 275 DTSFALCSSHT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIP 126 +TSFAL ++ S PT + P +E + +S+PA P L+ P Sbjct: 79 ETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSP 128 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 24.6 bits (51), Expect = 3.2 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 106 LVVDNGSGMCKAGFAG 153 +V+DNG+ KAGFAG Sbjct: 8 IVLDNGAYHIKAGFAG 23 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 24.6 bits (51), Expect = 3.2 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGM 225 G+ PRA F ++ P H G+++ M Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526 >SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 219 Score = 24.2 bits (50), Expect = 4.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 138 LAHTGAIVYYQRGNFFVAHLELVF 67 L TGAIV Y G FF + L+F Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79 >SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 23.8 bits (49), Expect = 5.6 Identities = 11/42 (26%), Positives = 21/42 (50%) Frame = -3 Query: 249 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTG 124 +Y +LL D + + G +DR + + + + C L H+G Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267 >SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 425 Score = 23.8 bits (49), Expect = 5.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 145 NRPCTYRSHCLLPTRQ 98 NRP YRSH + TR+ Sbjct: 323 NRPSNYRSHSSMGTRR 338 >SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 23.4 bits (48), Expect = 7.5 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 Query: 188 TIEGNTARGASSPAKPALHIPEPLSTT 108 T EG A+ P P LHIP P TT Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,269,190 Number of Sequences: 5004 Number of extensions: 24847 Number of successful extensions: 79 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 78 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 75747362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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