Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0985
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 115 1e-27
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 62 2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 48 2e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 6e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 7e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.001
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.26
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 0.35
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.61
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 1.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 3.2
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 4.3
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 5.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 5.6
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 115 bits (277), Expect = 1e-27
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV DE ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 37.1 bits (82), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 58 AQSKRGILTLKYPIEH 73
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.7 bits (143), Expect = 2e-11
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DE 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V E
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 48.4 bits (110), Expect = 2e-07
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYV*DEHRA 264
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD V DE A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.3 bits (95), Expect = 2e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 246
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 6e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 7e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 201
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.26
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 250 LIHKSPSVPYRPSRPDGGAFPRSRGTR 170
LI K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 0.35
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 251 SHT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S+T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 0.61
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 245 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 275 DTSFALCSSHT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIP 126
+TSFAL ++ S PT + P +E + +S+PA P L+ P
Sbjct: 79 ETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSP 128
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAG 153
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGM 225
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 138 LAHTGAIVYYQRGNFFVAHLELVF 67
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 249 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTG 124
+Y +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 145 NRPCTYRSHCLLPTRQ 98
NRP YRSH + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 188 TIEGNTARGASSPAKPALHIPEPLSTT 108
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,190
Number of Sequences: 5004
Number of extensions: 24847
Number of successful extensions: 79
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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