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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0985
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   115   1e-27
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    62   2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    48   2e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    42   2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    40   6e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    37   7e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    36   0.001
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.26 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   0.35 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   0.61 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   1.1  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   3.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   3.2  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    24   4.3  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   5.6  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    24   5.6  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   7.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  115 bits (277), Expect = 1e-27
 Identities = 51/60 (85%), Positives = 57/60 (95%)
 Frame = +1

Query: 88  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV DE ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61



 Score = 37.1 bits (82), Expect = 6e-04
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 255 AQSKRGILTLKYPIEH 302
           AQSKRGILTLKYPIEH
Sbjct: 58  AQSKRGILTLKYPIEH 73


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 61.7 bits (143), Expect = 2e-11
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DE 255
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +V  E
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 94  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYV*DEHRA 264
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  V DE  A
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 246
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 40.3 bits (90), Expect = 6e-05
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 91  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 36.7 bits (81), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 91  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 201
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 250 LIHKSPSVPYRPSRPDGGAFPRSRGTR 170
           LI K+PS PY  SRP   A   S  TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 251 SHT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
           S+T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -1

Query: 245 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
           T  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 275 DTSFALCSSHT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIP 126
           +TSFAL ++    S    PT +      P +E +    +S+PA P L+ P
Sbjct: 79  ETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSP 128


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 106 LVVDNGSGMCKAGFAG 153
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGM 225
           G+  PRA F  ++  P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 138 LAHTGAIVYYQRGNFFVAHLELVF 67
           L  TGAIV Y  G FF +   L+F
Sbjct: 56  LFRTGAIVAYILGMFFTSSFMLLF 79


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 249 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTG 124
           +Y  +LL   D + +  G  +DR +  + + + C   L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 145 NRPCTYRSHCLLPTRQ 98
           NRP  YRSH  + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 188 TIEGNTARGASSPAKPALHIPEPLSTT 108
           T EG  A+    P  P LHIP P  TT
Sbjct: 31  TFEG--AQPQWEPPIPGLHIPPPPGTT 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,190
Number of Sequences: 5004
Number of extensions: 24847
Number of successful extensions: 79
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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