Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0985
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 101 9e-23
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 101 9e-23
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 101 9e-23
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 101 9e-23
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 101 9e-23
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 101 9e-23
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 97 2e-21
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 97 2e-21
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 97 2e-21
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 96 5e-21
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 57 2e-09
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 3e-09
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 56 5e-09
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 46 5e-06
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 43 5e-05
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 36 0.005
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.021
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 33 0.048
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 27 1.8
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 27 1.8
At4g30070.1 68417.m04277 plant defensin-fusion protein, putative... 27 2.4
At2g05290.1 68415.m00557 expressed protein similar to zinc finge... 27 2.4
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 3.2
At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase famil... 26 4.2
At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase famil... 26 4.2
At3g48860.2 68416.m05337 expressed protein 26 4.2
At3g48860.1 68416.m05336 expressed protein 26 4.2
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 26 4.2
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ... 26 4.2
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 25 7.4
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 25 7.4
At4g16670.1 68417.m02518 expressed protein 25 7.4
At2g47500.1 68415.m05929 kinesin motor protein-related 25 7.4
At2g38460.1 68415.m04723 iron transporter-related contains tran... 25 7.4
At1g49840.1 68414.m05588 expressed protein contains Pfam profile... 25 7.4
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 25 7.4
At5g19400.1 68418.m02312 expressed protein 25 9.7
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 25 9.7
At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620... 25 9.7
At3g24540.1 68416.m03082 protein kinase family protein contains ... 25 9.7
At3g03720.1 68416.m00377 amino acid permease family protein simi... 25 9.7
At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putati... 25 9.7
At1g60060.1 68414.m06766 expressed protein 25 9.7
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 101 bits (242), Expect = 9e-23
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YV DE ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YV DE ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YV DE ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YV DE ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQSKRGILTLKYPIEH
Sbjct: 60 AQSKRGILTLKYPIEH 75
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRAK 267
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++V DE +A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
Score = 33.1 bits (72), Expect = 0.037
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
AQ++RGIL+LKYPIEH
Sbjct: 61 AQARRGILSLKYPIEH 76
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV*DEHRA 264
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYV +E A
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHA 51
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYV 246
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD V
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVV 55
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+V+DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 189
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.021
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 227 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 90
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 32.7 bits (71), Expect = 0.048
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 198
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 103 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 195
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEH 302
A+++ GILTL YP+EH
Sbjct: 15 AEARSGILTLDYPMEH 30
>At4g30070.1 68417.m04277 plant defensin-fusion protein, putative
contains a C-terminal plant defensin domain, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be)
Length = 129
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 280 VRIPLLLCAHLIHKSPSVPYRPSRPDGGA 194
V +PL C + PS P P + DGGA
Sbjct: 59 VGVPLCKCYYECESPPSPPAPPKKCDGGA 87
>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 383
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 289 YLRVRIPLLLCAHLIHKSPSVPYRPS 212
Y R+R C L H+ P PY PS
Sbjct: 199 YERIRKRCFQCQRLTHEKPRCPYLPS 224
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 203 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 90
WR P + + A+GA P + AL +PL+ ++ +S+
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSA 204
>At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 380
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -3
Query: 249 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAHLEL 73
SY+ L+ D H+ P HDR G + E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 72 V 70
+
Sbjct: 78 L 78
>At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 352
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -3
Query: 249 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAHLEL 73
SY+ L+ D H+ P HDR G + E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 72 V 70
+
Sbjct: 78 L 78
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 182 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 84
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 182 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 84
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 203 WRGLPTIEGNTARGASSPAKPA--LHIPEPL 117
WR + T G + +SSP KP LH P+
Sbjct: 55 WRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85
>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 764
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 216
E++ A + + G G+C A +D + V I GR +GV+
Sbjct: 632 EDLEAKLTEYGFGLCAADKDVEDFGKTVLALITGRYEPEGVV 673
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 240 RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAI 118
R+ L TD A R GA ++ C T HTG +
Sbjct: 28 RLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKV 68
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 240 RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAI 118
R+ L TD A R GA ++ C T HTG +
Sbjct: 28 RLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKV 68
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 279 SGYLFCSVLISYIRVLLSHTDHHALMAGPSHDRGEHGARSII 154
+G S L S +L SH A +AG HDR RS +
Sbjct: 189 AGSKMSSALASASELLASHCLELAELAGADHDRVVSAVRSAV 230
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 256 AHLIHKSPSVPYRPSR 209
A L HK+P VPYR S+
Sbjct: 656 ASLAHKNPHVPYRNSK 671
>At2g38460.1 68415.m04723 iron transporter-related contains
transmembrane domains; similar to iron-regulated
transporter IREG1 (GI:7264727) [Mus musculus]; similar
to ferroportin1 (GI:7109247) [Mus musculus]
Length = 524
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 236 SFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAAT 96
SF + T T W G+PT RG S+ A + PL + +T
Sbjct: 330 SFGTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLST 376
>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 494
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 203 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 90
WR P + +TA+G P + AL +P +T S
Sbjct: 262 WRHTPWLGSHTAKGPVRPLRRALQGLDPRTTATMFAES 299
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 152 PAKPALHIPEPLSTTNA 102
PAKP +H P+P++ N+
Sbjct: 159 PAKPKVHQPQPITVENS 175
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV-GMGQKDS 240
NG+GM ++ P AVFP + GV+ G+G + S
Sbjct: 873 NGNGMGGMPYSQSRTPEAVFPPKIDPVLSSGVVADGLGVQSS 914
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+C + L + +G+ G DD RAVF S G+ R Q
Sbjct: 222 LCHLGSSILALGHGTSRISMGETQDDVGRAVFISPTGQNRLQ 263
>At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620:
Protein of unknown function (DUF788)
Length = 173
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 270 LFCSVLISYIRVLLSHTDH 214
+ C++L +RV++SH+ H
Sbjct: 25 ILCNILYVLVRVIISHSSH 43
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 173 TARGASSPAKPALHIPEPL 117
T ASSP P + +PEPL
Sbjct: 35 TMSSASSPPPPQVFVPEPL 53
>At3g03720.1 68416.m00377 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 600
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFP 180
++V G CK G+ G D P FP
Sbjct: 198 IIVVGGYLACKTGWVGYDLPSGYFP 222
>At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putative
similar to SP|P50855 Riboflavin biosynthesis protein
ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
synthase)] {Actinobacillus pleuropneumoniae}; contains
Pfam profiles PF00925: GTP cyclohydrolase II, PF00926:
3,4-dihydroxy-2-butanone 4-phosphate synthase
Length = 476
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR 195
E A VV +G+G+ G+D R P +V R
Sbjct: 146 EAMAFVVKHGTGIVCVSMKGEDLERLELPLMVTR 179
>At1g60060.1 68414.m06766 expressed protein
Length = 386
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 223 YRPSRPDG-GAFPRSRGTRR 167
Y P + DG GA+ RSRG RR
Sbjct: 42 YPPPKWDGQGAYDRSRGNRR 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,926,230
Number of Sequences: 28952
Number of extensions: 142318
Number of successful extensions: 384
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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