Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0984
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 3e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 6e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 7e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 9e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.044
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.31
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 3.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (435), Expect = 3e-46
Identities = 80/90 (88%), Positives = 83/90 (92%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVAIQ 510
APLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 104 bits (250), Expect = 9e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51
Score = 76.6 bits (180), Expect = 3e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +3
Query: 510 AVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPH 617
AVLSLYASGRTTGIVLDSGDGV HTVPIYEGYALPH
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 173
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 405
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 406 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 510
+LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 510 AVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPH 617
AVLSLYA G ++G+V+DSGDGV H VP+YE L H
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 214
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 98.7 bits (235), Expect = 6e-22
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 429
++VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 430 NPKANREKMTQIMFETFNTPAMYVAIQP 513
N+EK+ + +ET N PA+ ++QP
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
Score = 56.8 bits (131), Expect = 2e-09
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 513 VLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALP 614
VL+LYAS RTTGIVL+ GDG+ H+VPIY+G+++P
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIP 177
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 7e-21
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 432
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 433 PKANREKMTQIMFETFNTPAMYVAIQ 510
P NRE +IMFE+FN +Y+A+Q
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 543 TGIVLDSGDGVFHTVPIYEGYAL 611
TG V+DSGDGV H +P+ EGY +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVI 202
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 DGR--YGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
DGR +G E +Y +S G + +K I +G V NWD +W + +L+ P EH
Sbjct: 46 DGRRLFGEEYIY-----KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 510
P+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 100 PILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 507
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 217
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 9e-08
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 429
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 430 NPKANREKMTQIMFETFNTPAMYVAIQ 510
NP++ R+++ + FE + PA Y+ Q
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 474
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 475 TFNTPAMYVAIQP 513
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.7 bits (71), Expect = 0.044
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH-HTFYNELRVAPEEHPVLLTE--A 423
LYV D++ + ++ P + D + + + +Y L E+HP+LLT+ A
Sbjct: 1360 LYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLA 1419
Query: 424 PLNPKANREKMTQIMFETFNTPAM---YVAIQ 510
L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1420 ALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 339 IPVSDDSVFDGVFEGQDTSFALCLISYIKSFCPIPTITP*WRGLPTIEGNTARGASSPAK 160
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 159 PALHIP 142
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 255 KSFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 151
KSF P+PT P LPT NT + P+ PAL
Sbjct: 68 KSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 237 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 103
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 502 AIQPCSRCTRPVVPPVSCWTPATVSSTPCPSTKDT 606
+I P T PV P V P T SSTP +T T
Sbjct: 398 SIPPTGNSTTPVTPTV----PPTSSSTPLTTTNCT 428
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 511 PCSRCTRPVVPPVSCWTPATVSSTPCPSTKDTHFP 615
PC+ + PPV+C TP C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 409 LLTEAPLNPKANREKMTQIMFETFN 483
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 167 GDDAPRAVFPSIVGRPRHQGVMVGM----GQKDFM 259
G+ PRA F ++ P H G+++ M G ++FM
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISMKDWIGGEEFM 536
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 527 RVRSYHRYRAGLRRRCLPHRAHLRR 601
R RS HR+ G RR P+R HL R
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSR 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,904
Number of Sequences: 5004
Number of extensions: 57059
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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