Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0983
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    28   0.057
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 0.057
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 178 LYLVMCFIEMFVFLSVSVASNYT 110
           +YLVMCF+ +F  L    A NYT
Sbjct: 306 IYLVMCFVFVFAALLEYAAVNYT 328


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 89  LAFSLLVDNANAFSNFSDVLTIFNK 15
           LA   L DNA AF    +++TIF +
Sbjct: 228 LALRWLRDNAEAFGGDPELITIFGE 252


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 89  LAFSLLVDNANAFSNFSDVLTIFNK 15
           LA   L DNA AF    +++TIF +
Sbjct: 228 LALRWLRDNAEAFGGDPELITIFGE 252


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 EPFSLQKHLSMNHFYQSSNLKTM 293
           E +  ++H++++H Y +  +K M
Sbjct: 96  ESYLKERHITLHHCYDADGIKLM 118


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 EPFSLQKHLSMNHFYQSSNLKTM 293
           E +  ++H++++H Y +  +K M
Sbjct: 96  ESYLKERHITLHHCYDADGIKLM 118


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 80  SLLVDNANAFSNFSDVLTIFNKVSN 6
           S +VD     SN++DV  IF  +S+
Sbjct: 77  SPMVDFGYDISNYTDVHPIFGTISD 101


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 80  SLLVDNANAFSNFSDVLTIFNKVSN 6
           S +VD     SN++DV  IF  +S+
Sbjct: 77  SPMVDFGYDISNYTDVHPIFGTISD 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,175
Number of Sequences: 438
Number of extensions: 1832
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)