Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0982
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  30   1.6  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                28   6.5  

>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 309 MKIKCYKILKNLFCGTKVCHKSMSC 235
           +K KCY++L NL C T+V +    C
Sbjct: 38  VKRKCYELLNNLLCDTRVSYVFPDC 62


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 CYKILKNLFCGTKVCHKSMSCF 232
           C K+  ++ CG KVCH    CF
Sbjct: 830 CTKVPSSVACGGKVCHTHAECF 851


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 205 YMFFVL*IIMCILVHKIRIINITVT*NLHHILKMML--KVLLCQY 77
           Y ++   I + +L+H+    +ITV   LHHI   +L   VLL QY
Sbjct: 393 YQYYCTSITVPVLLHQYYCTSITVPVLLHHITAPVLLQPVLLYQY 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,118
Number of Sequences: 59808
Number of extensions: 275266
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)