Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0981
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.48 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = -1

Query: 552 SARASAGC----EAPRASPAAAHVRMCVQHGPHQRGAGARY 442
           + RA+  C    EA R  PA  H+R    H  H  G G  Y
Sbjct: 286 TGRATCDCPNCQEAERLGPAGVHLRKKNIHSCHIPGCGKVY 326


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 119 KNCLSLFFEIYCL 157
           KNC+ + FE+Y L
Sbjct: 256 KNCVIVIFELYYL 268


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 128 LSLFFEIYCLLITFAVH 178
           L   +  YC+ ITF VH
Sbjct: 53  LRRIYYFYCVSITFNVH 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,903
Number of Sequences: 336
Number of extensions: 1973
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)