Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0981
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95... 31 0.53
09_04_0519 - 18276797-18276874,18277214-18277419,18277527-182776... 29 2.1
08_02_1504 + 27578857-27579282 29 2.8
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 29 2.8
01_06_1119 - 34640611-34640721,34640995-34641075,34641437-346414... 29 2.8
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743 29 3.7
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 29 3.7
02_03_0147 - 15738479-15738650,15739015-15739256 28 4.9
11_08_0033 + 27820563-27823482,27823593-27823996 28 6.5
07_01_0144 + 1063207-1063320,1063414-1063550,1064683-1064710 28 6.5
06_01_0360 + 2581774-2582288,2582414-2582609 28 6.5
03_01_0217 - 1712979-1713794 28 6.5
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 27 8.6
>03_01_0122 +
954356-954491,954877-955030,955141-955231,955732-955806,
955884-955972,956084-956202,956338-956478,956817-956893,
958615-959217
Length = 494
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -2
Query: 527 RHHARLRPQRTSGCASSMA-RISVVPERGTPPMKM----SGKSRPATG 399
RH AR RP R S C S A R+S++ G P++ GK+ TG
Sbjct: 22 RHVARRRPSRRSACPRSAASRLSIMAALGEDPIRQWILTEGKATKITG 69
>09_04_0519 -
18276797-18276874,18277214-18277419,18277527-18277683,
18278069-18278454,18279291-18279317,18279609-18279720
Length = 321
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 555 PSARASAGCEAPRASPAAAHVRMCVQHGPHQRGAGARYAADEDERQVASGD 403
P +RA E+P A+ AAA +R ++ G GA R+AA A+ D
Sbjct: 66 PFSRARVLSESPAAAAAAAMLRSALRRG----GAAVRHAASSSSAAEAAAD 112
>08_02_1504 + 27578857-27579282
Length = 141
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = -1
Query: 594 ACFENARFLSESGPSARASAGCEAPRASPAAAHVRMCVQHGPHQRGAGARYAADEDERQV 415
A E LSES S R+S+ AS +A+ R V + P +RG G A DED+ Q
Sbjct: 47 AAAEQLIHLSESSSSPRSSS-FSFTSASASASSPRS-VSNAP-RRGGGLGEADDEDDEQE 103
Query: 414 ASG 406
G
Sbjct: 104 VGG 106
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 561 SGPSARASAGCEAPRASPAAAHVRMCVQHGP 469
S P + G E P ASPAA V V+ GP
Sbjct: 3 SSPPGAGAGGEERPAASPAAPAVAEAVEEGP 33
>01_06_1119 -
34640611-34640721,34640995-34641075,34641437-34641496,
34641596-34641645,34641758-34641809,34642462-34642599,
34642716-34642979,34643057-34643114,34643178-34643287,
34643650-34643925
Length = 399
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 516 RVVPRILQMREHWARSQKESV 578
RVVP IL+ HW+ SQK +
Sbjct: 375 RVVPEILKRHRHWSASQKVEI 395
>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
Length = 105
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 499 RCGRRRAWCLASCRCASTGPALRKKAC 579
RC R C ++CRC G A ++ C
Sbjct: 62 RCSRSCLTCCSACRCVPAGTAGNRETC 88
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 460 TLMRAMLDAHPDVRCGRRRAWC 525
+L+R H VRCG+R WC
Sbjct: 37 SLIRPSFRGHHKVRCGQRSGWC 58
>02_03_0147 - 15738479-15738650,15739015-15739256
Length = 137
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +1
Query: 445 PRSGTTLMRAMLDAHPDVRCGRRRAWCLASCRCASTGPALRKKACVLEAGR 597
P L+R + A RRR WC R + P R++ C + R
Sbjct: 22 PEKFPLLVRTLAQAISSATLARRREWCGQRRRGRRSPPRTRRRRCAVRPPR 72
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -2
Query: 557 GPVLAHLQDARH---HARLRPQRTSG-CASSMARISVVPERGTPPMKMSGKSRPA 405
GP+ HL DA+H H L SG S+A +S++ P ++SG PA
Sbjct: 192 GPIPKHLFDAKHSLTHIYLGDNSLSGPIPDSVASLSMLRVLSLPSNQLSGPVPPA 246
>07_01_0144 + 1063207-1063320,1063414-1063550,1064683-1064710
Length = 92
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 566 LRAGPVLAHLQDARHHARLRPQRTSGCASSMARISVVPERGTPPMKMS 423
L A + Q + H+ + RT ASS R P GTP +++S
Sbjct: 7 LTASAARPNPQGSFHYGTIATSRTLMLASSAPRPGAAPRSGTPVVRLS 54
>06_01_0360 + 2581774-2582288,2582414-2582609
Length = 236
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/57 (19%), Positives = 25/57 (43%)
Frame = -2
Query: 542 HLQDARHHARLRPQRTSGCASSMARISVVPERGTPPMKMSGKSRPATGACRSLERGG 372
+L + + H+ PQ +++MA + P++ S+P ++ +GG
Sbjct: 172 NLVEVKRHSAKNPQEDQPMSATMATAAAAETTAPAPVRAETSSKPEEAPAKAATKGG 228
>03_01_0217 - 1712979-1713794
Length = 271
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 555 PSARASAGCEAPRASPAAAHVRMCVQHGPHQRGAGARYAADEDERQVASG 406
P +ASA PR +PAA R+ P Q A A D +V+SG
Sbjct: 113 PWLQASAVARKPRRAPAAVRKRVWSLVSP-QLATAAAAAVDNSRDEVSSG 161
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 486 CVQHGPHQRGAGARYAADEDERQVASGD 403
C+ GPH AG + A EDE + A GD
Sbjct: 174 CMSTGPHYNPAGKEHGAPEDETRHA-GD 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,448
Number of Sequences: 37544
Number of extensions: 218639
Number of successful extensions: 953
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -