Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0979
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 33 0.042
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 31 0.17
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 30 0.29
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 30 0.29
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.39
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.52
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 29 0.68
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 28 1.2
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.2
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 1.2
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 27 2.1
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 27 2.1
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 27 2.7
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 27 2.7
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 3.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 3.6
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.8
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 4.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 4.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 4.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.3
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 25 6.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.3
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 8.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 8.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.4
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.4
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 32.7 bits (71), Expect = 0.042
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -2
Query: 495 PHDLIRRLNADVQAETAMKEREFEWLSETGS-SLIEVAKKEEKSYSKNTSKQLKDMEERW 319
P L LNA + +T F+WL + G+ + ++A+ + +D EE
Sbjct: 692 PRMLPSHLNAIIDVDTWEVPEVFKWLKDAGNVPISDMARTFNMGIGMVVAVASEDAEETM 751
Query: 318 RKLQETGRSRIVKITELLETINSSKR 241
++L G + + +I +L++ +SS+R
Sbjct: 752 KELTSVGET-VYRIGQLVDKESSSER 776
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = -2
Query: 408 GSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSSKRGLQK 229
GSSL V ++ Y + GR IVK++EL INSSK Q
Sbjct: 165 GSSLSNVFTEKSSDYRHGLGSPTSLVSSNTASKLHLGRKDIVKLSELRNCINSSKDSNQI 224
Query: 228 SE 223
E
Sbjct: 225 QE 226
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 366 YSKNTSKQLKDMEERWRKLQETGRSRIVKITEL-LETINSSKRGLQKS 226
Y T +L D+++RW L ++ K+TEL E NS+++ S
Sbjct: 49 YDSYTGVELVDLDKRWDILSLNPNYKLPKLTELPAEATNSTRKATSSS 96
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 29.9 bits (64), Expect = 0.29
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 169 LTTKSVDEKFKERDDTHKEIE 107
+TTK++DE+ KE D+ KE+E
Sbjct: 50 ITTKTLDERIKEDDELSKEVE 70
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.39
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 474 LNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR 295
+ A+V K+R+ SE E AKKEEK K K+ K+ +E+ K ++ +
Sbjct: 415 VEAEVNGVEDSKKRKSVESSEKDED--EAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Query: 294 S 292
S
Sbjct: 473 S 473
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 0.52
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Frame = -2
Query: 396 IEVAKKEEKSYSKNTSKQLKD-MEER-----WRKLQETGRSRIVK-ITELLETINSSKRG 238
+EV K+E++S SK +KQL+D + E+ ++K E RS + IT L E I +
Sbjct: 1019 VEVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKERSL 1078
Query: 237 LQKSE*NYTS 208
+++ NY S
Sbjct: 1079 MKECHSNYES 1088
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 233 CKPLFELFIVSSNSVIFTILDLPVSWSFRHLSSMSF 340
C + E + SS + T+LDL + WSF + S F
Sbjct: 150 CYNILETYAASSLNKASTLLDLSIPWSFPNESLQQF 185
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = -2
Query: 519 Q*RHTALDPHDLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQL 340
Q RH A+ + ++ A A + ER+ +S I+ + K+Y K QL
Sbjct: 113 QMRHQAMLLEENNKKATALANA-SVQNERQMPSSMTLDNSEIKPVLNQRKNYLKPDPYQL 171
Query: 339 KDMEERWRKLQETGRSRIVKITELLETINS 250
+M+ + KL + RI+ EL + ++S
Sbjct: 172 PEMDVSFDKLGSSYDPRIMSQDELTQYVSS 201
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 306 PGVFAIFLPCPSTVLTCFCYMTFPL 380
P V IFLP P TV+ C +TF +
Sbjct: 368 PSVCRIFLPSPGTVVFCVFDVTFAM 392
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -2
Query: 492 HDLIRRLNADVQ-AETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWR 316
H ++ +L D+Q E + RE E + S L A++EE + KQL+DM+ R++
Sbjct: 305 HQMLIQLENDLQFREQRLSARESELENVIASRL---AQREE-ILRRELEKQLRDMDARYQ 360
Query: 315 KLQET 301
+ +T
Sbjct: 361 RHMQT 365
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 495 PHDLIRRLNADVQAETAMKEREFEWLSE-TGSSLIEVAKKEEKSYSKNTSKQLKDMEERW 319
PHD + ++++ M++ E + E T L + AKK+ + QL EER
Sbjct: 167 PHDYFAEM---LKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQ 223
Query: 318 RKLQET 301
R+ +ET
Sbjct: 224 REKKET 229
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 315 FAIFLPCPSTVLTC---FCYMTFPLSLLPL*ESYRFQRAIQIH 434
+A L CP +L +CY + LP SYR QR IH
Sbjct: 166 YAKILDCPDEILQLIFSYCYDASYIEKLPFAFSYRKQRHTLIH 208
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 154 VDEKFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKGNFDL 20
VD K D +E+ E+G V ++ +++NDP + N +
Sbjct: 92 VDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKI 136
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/66 (27%), Positives = 39/66 (59%)
Frame = -1
Query: 247 EERLTEIRIKLHVIESKLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNLC 68
E+++ E++ ++I+ L T +E T S+ EKF + + K++ +E E+CE L+
Sbjct: 102 EKKINELQTFTNIIDQILGQTNNIES-TLLSMKEKF---ESSEKKL-SEFSEMCENLSTD 156
Query: 67 DLVFND 50
++ F++
Sbjct: 157 EMRFSE 162
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2
Query: 465 DVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEER 322
D ET KE + + ET S IEV KEEK+ SK T+ +++ + +
Sbjct: 482 DKVEETESKEADVK-AKETDS--IEVDDKEEKTDSKETADKVEQTDSK 526
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 372 KSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSSKRGLQKSE 223
+S +K K+LK+ +E W + E S+ K ELL + ++SE
Sbjct: 988 ESKNKELEKKLKEADEYWLLIVEELESKRTKDKELLRQCGQAVSEDEQSE 1037
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -1
Query: 250 LEERLTEIRIKLHVIESKLTTTVILEYLTTKSVDEKFKERDDTHKEIE 107
+ E+++E RI + S + ++++LT+KS + F DT++ E
Sbjct: 324 MNEKVSEDRITTNQSRSGNDESSLVDFLTSKSDNSSFNFPSDTYEGTE 371
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 569 TEWIPTVETRLETSGSSSSDTP 504
T+WI +ET ET+ S S P
Sbjct: 20 TDWIDVIETMRETNESPKSQNP 41
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 48 GSLNTRSQRFKVSHTSPLSASIS 116
GSLNT F SH+S L S S
Sbjct: 148 GSLNTAPSNFAYSHSSSLQTSAS 170
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 459 QAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKL 310
+ +TA+ + +FE LSE IE ++K ++N K K+ R R+L
Sbjct: 988 KGKTAVDDGKFEDLSEKDLKKIEAKATKKKKLTRNEIK-AKERRAREREL 1036
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -2
Query: 438 EREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLET 259
++ + +S+ +I V KKE+ + +T K L D ++ L +TG S + + +
Sbjct: 337 KKSYNHVSDLDGEVI-VMKKEDITDGVSTKKDLNDGDQNEVPLHDTGSSSSLSLLYNEDV 395
Query: 258 INSSKR 241
+ KR
Sbjct: 396 ASKKKR 401
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 181 ILEYLTTKSVDEKFKER-DDTHKEIEAESGEVCETLNLCDLV 59
+ E+L K V ++F E+ DDTH + E + E + L +C ++
Sbjct: 781 VTEFLV-KKVIQRFPEKYDDTHNDEEWCTYEKLDNLTMCKVL 821
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.3
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = -2
Query: 477 RLNADVQAETAMKEREFEWL---SETGSSLIEVAK--KEEKSYSKNTSKQLKDMEERWRK 313
++NA V+AE++ E + +T IE+ + K+ + ++ +L ME++WR+
Sbjct: 473 KMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIEEDYENKLMRMEQQWRE 532
Query: 312 LQETGRSRIVKITELLETINSSKRGLQKS 226
+ + + +IT+ L+ +K L KS
Sbjct: 533 DVDQLQEYVEEITQELQ---DTKEVLSKS 558
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 414 ETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITEL 268
E I A + K+Y T Q + ERW +L + +VK+ L
Sbjct: 55 EETKKAISAANEAFKTYKNFTHVQRSQLLERWAELIMENKDDLVKMLTL 103
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 368 DFSSFFATSIRELPVSESHSNSRSF 442
D+ FF ++RE P+S + R F
Sbjct: 197 DYDDFFTNTVRETPLSSAPEPKRRF 221
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 432 EFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVK 280
E E S T S + K ++ YS N ++ + +W++LQE G + K
Sbjct: 71 EREGSSLTHSWTFQPGKHNQRLYSDN----FQEAQRQWKRLQEWGEVKETK 117
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 560 IPTVETRLETSGSSSSDTPL*IPT 489
+PT E +ET+ S+S +T +PT
Sbjct: 63 LPTQEAAVETNASASHETSFALPT 86
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 287 ILDLPVSWSFRHLSSMSFNCFDVFLLYDFSSFF 385
+LDLP +RHLS + + Y++ S+F
Sbjct: 299 LLDLPPFMRYRHLSDVEWKSCFYKSYYEYRSWF 331
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 381 KEEKSYSKNTSKQLKDMEERWRKLQETG 298
+ EK Y++N ++++ RW+KL+E+G
Sbjct: 2 RAEKQYTRN---EVEETIVRWKKLKESG 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,891
Number of Sequences: 5004
Number of extensions: 44949
Number of successful extensions: 213
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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