Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0979
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 30 1.6
03_06_0722 - 35751490-35754357 30 1.6
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 29 2.1
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 29 3.7
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 3.7
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 28 4.9
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 28 4.9
11_06_0717 - 26575009-26575152,26576461-26577978 28 6.5
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 6.5
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 27 8.6
02_04_0149 + 20201674-20201891,20202009-20202111,20202658-202027... 27 8.6
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = -2
Query: 384 KKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSSKRGLQK 229
+K + +++ + LK+ W+K++ + +VK+ ++L+T S K L +
Sbjct: 516 EKVLRQSAEDEANDLKNQVLHWKKMEAAATAEVVKLRKMLDTEASQKEKLDE 567
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -2
Query: 489 DLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKL 310
D I R+ A+ Q ERE++ E E+ Y + +K +EE+W K+
Sbjct: 439 DEIERITAEAQLRVTEAEREYKISLEN----------EKAKYHQEYLDSIKILEEKW-KI 487
Query: 309 QETGRSRIVKITE 271
+ +++K TE
Sbjct: 488 HQQSPKKLIKETE 500
>03_06_0722 - 35751490-35754357
Length = 955
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = -2
Query: 408 GSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRI---VK----ITELLETINS 250
G+S+ E S ++ K ++E RKL+ET ++ + VK +TE L I+S
Sbjct: 392 GTSIFASGSAEFLSIAQQADVASKALQENIRKLKETHKTTVDALVKTDTHLTEALSEISS 451
Query: 249 SKRGLQKSE 223
+ GLQ +E
Sbjct: 452 LESGLQDAE 460
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -2
Query: 474 LNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR 295
+ A+ + E + + E LS+ SSL E + S +T K+LKD+E + LQ+
Sbjct: 909 MTAEAEKENSNLKNLVESLSKRNSSL-EYELTSARKGSDDTMKKLKDVEGKCNHLQQNLD 967
Query: 294 SRIVKITEL 268
K+T L
Sbjct: 968 KLQEKLTNL 976
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = -1
Query: 232 EIRIKLHVIESKLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNLCDLVFN 53
E L S+L V+ E S++E + D K I CE L LVF
Sbjct: 930 ECNENLETKSSRLLVVVVEECKCLNSLEESLLVQGDYIKSIHVLRISDCEDLEAAPLVFE 989
Query: 52 DPDVLKGNFDLRN 14
+ L+ D+RN
Sbjct: 990 QMNELR-ELDIRN 1001
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 423 WLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQ 307
W S TG+S +++ + ++ + KDM+ R KLQ
Sbjct: 741 WTSATGTSRAIISRDKFSTFDRRGKDMSKDMDNRMPKLQ 779
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 510 HTALDPHDLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDM 331
H HD + + N DV + ++ +LSE + + K E K +NT++ K
Sbjct: 366 HPNSPKHDTVDKANQDVDYGSVGIQKAAAFLSEDRNGATQGEKSEIKDPPENTAEHTKMF 425
Query: 330 EE 325
E+
Sbjct: 426 EQ 427
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/57 (22%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 393 EVAKKEEKSYSKNTSKQL-KDMEERWRKLQETGRSRIVKITELLETINSSKRGLQKS 226
E+ K+ E+++ ++ + K +EE+W ++++ + + ++ ET N SK+ K+
Sbjct: 149 ELEKEFERAFEQSDIANVTKTLEEKWAEMKKPAPAEVKGTSQEKETANPSKKETGKT 205
>11_06_0717 - 26575009-26575152,26576461-26577978
Length = 553
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -2
Query: 393 EVAKKEEKSYSKNTSKQLKDMEERWRK-LQET--GRSRIVKITELL--ETINSSKRGLQK 229
EV KK E + + KD+ E W K ++ET G+ ++ E L + +R L K
Sbjct: 316 EVLKKHEHDEEPDQKQMAKDLMEEWDKFIKETPAGKDAAERLKEKLPKHHVEDMRRSLTK 375
Query: 228 SE 223
E
Sbjct: 376 EE 377
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -2
Query: 474 LNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR 295
+ A+ + E + + E LS+ SSL E + S T K+LKD+E + LQ+
Sbjct: 1082 MTAEAERENSNLKNLVESLSKNNSSL-EYELTSARKGSDATMKKLKDVEGKCNHLQQNLD 1140
Query: 294 SRIVKITEL 268
K+T +
Sbjct: 1141 KLQEKLTNM 1149
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 483 IRRLNADVQAETAMKEREFEWLSETGSSLI 394
+RRLN D++A T++ E EW +T L+
Sbjct: 463 LRRLNVDIEATTSL---ELEWRLQTSPQLL 489
>02_04_0149 +
20201674-20201891,20202009-20202111,20202658-20202765,
20202882-20202991,20203170-20203277,20203667-20203733,
20204044-20204078,20204456-20204501,20204692-20204844
Length = 315
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 218 FYSDFCKPLFELFIV--SSNSVIF--TILDLPVSWSFRHLSSMSFNCF 349
F D C + F+V S + IF ++D PV SFR SS+ F CF
Sbjct: 267 FKMDCCLTNDDAFVVGGSEDGYIFFWELVDAPVVSSFRAHSSVVFPCF 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,655
Number of Sequences: 37544
Number of extensions: 244150
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -