Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0979
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 0.58
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 30 1.0
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami... 30 1.0
At5g55860.1 68418.m06963 expressed protein contains Pfam profile... 30 1.3
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 30 1.3
At1g80870.1 68414.m09489 protein kinase family protein contains ... 30 1.3
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote... 29 1.8
At4g24950.1 68417.m03574 hypothetical protein 29 1.8
At3g28770.1 68416.m03591 expressed protein 29 2.4
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 29 2.4
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 29 3.1
At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast, pu... 28 4.1
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 28 4.1
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con... 28 5.4
At1g69060.1 68414.m07902 expressed protein 28 5.4
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil... 27 7.2
At5g20500.1 68418.m02436 glutaredoxin, putative similar to gluta... 27 9.5
At3g23930.1 68416.m03006 expressed protein 27 9.5
At2g42510.1 68415.m05261 spliceosome protein-related contains Pf... 27 9.5
At1g72250.1 68414.m08353 kinesin motor protein-related 27 9.5
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 27 9.5
At1g23070.1 68414.m02884 hypothetical protein contains Pfam prof... 27 9.5
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 27 9.5
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 447 AMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR---SRIVKI 277
+ + ++ L E + I+ + K + + + MEE R++QETG+ SR I
Sbjct: 278 SQEHKQINGLFEEREATIKKLTDDYKQAREMLEEYMSKMEETERRMQETGKDVASRESAI 337
Query: 276 TELLETINSSKRGLQK 229
+L ET+ S + +++
Sbjct: 338 VDLEETVESLRNEVER 353
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 384 KKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSSKR 241
KK+E+ + LK EER RKLQE +R + E L+ + + ++
Sbjct: 783 KKQERDIKRKQIYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERK 830
>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 789
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -2
Query: 441 KEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLE 262
KE E E L +T VA E + + + D+ +LQE G + +VK+ ELLE
Sbjct: 59 KEAEIEDLCKTHYEEFIVAVDELRGVLVDAEELKSDLASDNFRLQEVGSALLVKLEELLE 118
Query: 261 T 259
+
Sbjct: 119 S 119
>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 649
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 417 SETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQE--TGRSRIVKITELLETINSSK 244
+E SLIE AK S + ++ Q +DMEE +E T + + KI ++ I +K
Sbjct: 124 TEAAKSLIEEAKPGNVSVASSSDAQTRDMEEYGEVCKELDTAKQELRKIRQVSNEILETK 183
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -2
Query: 453 ETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDM-EERWRKLQETGRSRIVKI 277
E AMK + + L ++ +E K+ ++S N K+L+D+ ER KLQ S +
Sbjct: 501 EDAMKHLK-QQLDDSERYKLEYQKRYDES--NNDKKKLEDIYRERITKLQGENSSLNERC 557
Query: 276 TELLETINSSKRGLQKSE*NY 214
+ L++T+ S K +++ NY
Sbjct: 558 STLVKTVESKKEEIKEWIRNY 578
>At1g80870.1 68414.m09489 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 692
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = -2
Query: 468 ADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRK 313
A+ + E+ + E F+ L E + E+++++ K SKN K+ ++MEE W++
Sbjct: 403 AEHRDESGLNESRFDTLEEKFAKE-EISERKNKR-SKNKKKKHRNMEEWWKE 452
>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = -2
Query: 513 RHTALDPHDLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKD 334
RH + PHD++ + A + E ++ ++ET + L V E++ + K +++
Sbjct: 597 RHPFMAPHDMLDWVRAMREEEEGTEDNRLGMMTET-ACLCRVTSPEQRPTMRQVIKMIQE 655
Query: 333 MEE 325
++E
Sbjct: 656 IKE 658
>At4g24950.1 68417.m03574 hypothetical protein
Length = 157
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 384 KKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVK---ITELLETINSSKRGLQKS 226
++EE S ++ ++L+++EE W ++ S V + + LE + +S R L S
Sbjct: 3 EREESSSHEHLKEKLRELEEEWTAMKTGKNSSAVSWITVEDALEYVENSPRNLMLS 58
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -2
Query: 486 LIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKS---YSKNTSKQLKDMEERWR 316
L+++ + + + ++ E + + + S EV KKE+KS K K++K+ EE+
Sbjct: 1146 LVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKL 1205
Query: 315 KLQETGRSRIVKITE 271
K E R + + E
Sbjct: 1206 KKNEEDRKKQTSVEE 1220
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -1
Query: 271 ITRNYKQLEERLTEIRIKLHVIESKLT-----TTVILEYLTTKSVDEKFKERDD 125
I +N+K+ E+R R V+ S++T T + E++ +D KFKE+ D
Sbjct: 381 IVKNWKRPEDRFLTERDSSKVVISRITGELIPITEMSEHMRISLIDPKFKEQKD 434
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 411 TGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSS 247
T +LI+ KE Y + D++E W+K+Q+ G V LLE +S
Sbjct: 159 TSRTLIDTRMKEGV-YEGSPLLFSTDLQEVWQKMQDVGNDMAVLANSLLELSRTS 212
>At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast,
putative identical to SP|P82281|TL29_ARATH (EC
1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase
- Spinacia oleracea, (gi:1669585); contains Pfam domain
PF00141: Peroxidase; contains TIGRfam domain TIGR01409:
Tat (twin-arginine translocation) pathway signal
sequence; identical to ascorbate peroxidase APX4
(AT4g09010) mRNA, partial cds GI:31980499
Length = 349
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/88 (31%), Positives = 38/88 (43%)
Frame = -2
Query: 471 NADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRS 292
N ++ + + E E LS+ G SLIE KKE S SK D+ +Q G+S
Sbjct: 137 NGSIRFSSELSRAENEGLSD-GLSLIEEVKKEIDSISKGGPISYADI------IQLAGQS 189
Query: 291 RIVKITELLETINSSKRGLQKSE*NYTS 208
VK T L I +K YT+
Sbjct: 190 -AVKFTYLASAIRKCGGNEEKGNLLYTA 216
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -1
Query: 271 ITRNYKQLEERLTEIRIKLHVIESKLTTTVI-----LEYLTTKSVDEKFKERDD 125
I +N+K+ E+R+ R V+ S +T +I E++ +D KFKE+ D
Sbjct: 391 IVKNWKRPEDRIPTERDPTKVVISPITGELIPINEMSEHMRISLIDPKFKEQKD 444
>At5g19520.1 68418.m02325 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 742
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 578 KRFTEWIPTVETRLETSGSSSSDT 507
K FTEW+ V T +T G S +DT
Sbjct: 491 KTFTEWVVNVYTSRKTIGHSLNDT 514
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = -2
Query: 480 RRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQET 301
R+ +QA+ A K+R+ L +E +KE + T K KD E ++E
Sbjct: 487 RQRQLQIQADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQK--KDEEN--MNMKEK 542
Query: 300 GRSRIVKITELLE 262
R+ I K +LLE
Sbjct: 543 VRAEITKSLKLLE 555
>At1g26310.1 68414.m03209 MADS-box protein, putative strong
similarity to DNA-binding protein [Brassica rapa subsp.
pekinensis] GI:6469345, SP|Q41276 Floral homeotic
protein APETALA1 (MADS C) {Sinapis alba}; contains
InterPro accession IPR002100: Transcription factor,
MADS-box
Length = 255
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 501 LDPHDLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNT--SKQLKDME 328
L+P L N + Q ETA+K SL + +KE++ +N+ +KQ+K+ E
Sbjct: 119 LEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERE 178
Query: 327 ERWRKLQ 307
R Q
Sbjct: 179 NILRTKQ 185
>At5g20500.1 68418.m02436 glutaredoxin, putative similar to
glutaredoxin [Populus tremula x Populus tremuloides]
gi|19548658|gb|AAL90750
Length = 135
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 515 YC-YCPKSLNAFRQLESIP*IV 577
YC YC K+ + FR+L+ +P +V
Sbjct: 51 YCPYCKKAKSVFRELDQVPYVV 72
>At3g23930.1 68416.m03006 expressed protein
Length = 224
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 381 KEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINSSK 244
KE K QLK+ E WRK ++ R + ++ + LE +K
Sbjct: 32 KERDEREKVMFLQLKEAEREWRKERKKLREEVRRLRKKLEEREEAK 77
>At2g42510.1 68415.m05261 spliceosome protein-related contains Pfam
domain, PF04938: Survival motor neuron (SMN) interacting
protein 1 (SIP1)
Length = 646
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -2
Query: 414 ETGSSLIEVAK-----KEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINS 250
E GS+++E K KE S +L D + + + ET +V I+++ E++NS
Sbjct: 102 ENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETD-GFVVSISDMKESLNS 160
Query: 249 SKRG 238
K+G
Sbjct: 161 EKKG 164
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2
Query: 414 ETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRIVKITELLETINS 250
+T +L+ A++E + + +Q K+ME+ R ++E K E E +NS
Sbjct: 333 QTQENLVCRAEEEAEGMRSDCEQQRKEMEDMKRMVEELKLENQQKTRECEEALNS 387
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = -2
Query: 489 DLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKL 310
DL RR+ ++ E A++E+E E L + ++ + +S+ +K +K MEE W+K
Sbjct: 951 DLQRRV---LRTEAALREKE-----EENDILRQRVQQYDNRWSEYETK-MKSMEEIWQKQ 1001
Query: 309 QETGRSRIVKITELLETINSSK 244
++ +S + + LE +S++
Sbjct: 1002 MKSLQSSLSIAKKSLEVEDSAR 1023
>At1g23070.1 68414.m02884 hypothetical protein contains Pfam profile
PF03619: Domain of unknown function
Length = 414
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 341 NCFDVFLLYDFSSFFATSIREL 406
NC++ F LY F S+ + EL
Sbjct: 83 NCYEAFALYSFGSYLVACLGEL 104
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 441 KEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSR 289
+ERE + E E K+ E++ K ++ + EER+R+L+E R +
Sbjct: 145 EEREQQEKEERERIAEENLKRVEEAQRKEAMERQRKEEERYRELEELQRQK 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,870
Number of Sequences: 28952
Number of extensions: 221728
Number of successful extensions: 970
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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