BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0978 (638 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.57 SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 28 1.3 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 1.7 SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.0 SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 3.0 SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 4.0 SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 4.0 SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 5.3 SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 5.3 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 29.1 bits (62), Expect = 0.57 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 319 SCR--FLGELCHSDTSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATE 465 SC+ F +LCH D E C+ G+R E V +P H G P E Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754 >SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Schizosaccharomyces pombe|chr 3|||Manual Length = 830 Score = 27.9 bits (59), Expect = 1.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 113 SALPSLIGRRLRHYSLRPQRILLTPP 36 SAL L R L H ++PQ +LL PP Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 27.5 bits (58), Expect = 1.7 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 126 MTTSHCVKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSS 257 MT H K + LR++EN L D V L+ +GSP S+ S+ Sbjct: 1 MTEHHTPKSRILRFLEN-QYVYLCTLNDYVQLVLRGSPASSYSN 43 >SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1336 Score = 26.6 bits (56), Expect = 3.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 409 ATFFQGSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLI 290 +TF LR F+ T YL+D L+EI V S + L+ Sbjct: 476 STFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLV 515 >SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces pombe|chr 1|||Manual Length = 410 Score = 26.6 bits (56), Expect = 3.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 241 DQPGPRAFTRRAQSQGESSRPQTFGRSCRFLGELCHSDTSAE 366 DQ PR R+ +QG+ + T + L +L +D SAE Sbjct: 74 DQQPPRPLQRQQNTQGQGMKSGTASKKFATLRDLEGNDESAE 115 >SPBC530.06c |||translation initiation factor eIF3 alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 26.2 bits (55), Expect = 4.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 197 EFSRIRDIFHVSQSFFLD 144 E SRI D+ H+ + FF+D Sbjct: 508 ELSRISDLLHIKKHFFVD 525 >SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces pombe|chr 1|||Manual Length = 886 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 501 LPFRRQGSYVS*SSALGFRFNTPQETA 581 +P R GS +S +SA FR+++PQ+++ Sbjct: 67 IPTVRPGSSMSRTSASSFRYSSPQKSS 93 >SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 749 Score = 25.8 bits (54), Expect = 5.3 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 418 EEVEATPAHTGTPATEDPVPH 480 E A P H G+P TE P P+ Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547 >SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit Tfb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 477 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = -2 Query: 394 GSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLILPG 281 G+ +RFN +TYL + ++ S+V L + G Sbjct: 271 GNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKG 308 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,469,737 Number of Sequences: 5004 Number of extensions: 46933 Number of successful extensions: 132 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 285732116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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