Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0978
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154     30   1.3  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   9.5  
01_06_1147 + 34892415-34893702,34894051-34894676                       27   9.5  

>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
          Length = 520

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 226 VKAPLDQPGPRAFTRRAQSQGESSRPQ 306
           V+ P  QPGP+A    A S GE S PQ
Sbjct: 33  VEHPSPQPGPQAIASIASSDGEFSSPQ 59


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 KEKALRYVENVSNSRELNLIDGVSLIGQGSPR 242
           KEK+ +    ++ ++++ L+DGV ++   SPR
Sbjct: 483 KEKSSQAKRKLAKTKKMQLLDGVVVVSTSSPR 514


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 228 QGSPRSARSSSLYPTSPEPGRIK*TSDFWTEL 323
           Q  P +A S S  PTSP PG+ K    FW  +
Sbjct: 226 QPCPGTAPSPSPSPTSPSPGKAK--KGFWKRI 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,462
Number of Sequences: 37544
Number of extensions: 350760
Number of successful extensions: 972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)