Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0978
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08) 31 1.0
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17) 29 3.2
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 5.6
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 28 7.4
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 28 7.4
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 28 7.4
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 27 9.7
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08)
Length = 205
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 555 GSQERCFS*HKT-LDGGKAMIPRKTGMRDW-IFSCRSASMGRSCFNFFFLPRPSSKDRFA 382
G +E+ F + LD + + RKT W I R +G+S F FF P+SKD F
Sbjct: 19 GGEEKLFETSRIPLDAKETQLVRKT----WAILGDRQVEVGKSLFLRFFEEHPTSKDLFP 74
Query: 381 D 379
+
Sbjct: 75 E 75
>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
Length = 683
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 188 RIRDIFHVSQSFFLDTMRRCHRSKFSALPSLIGRRLRHYSLRPQRILL 45
R+ D+F + FFL R S F A+ + + H L+P+ ILL
Sbjct: 581 RLEDVFESTAFFFLVFEMRIMLSIFEAVDYMHYHNVVHRDLKPENILL 628
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 210 GVSLIGQGSPRSARSSSLYPTSPEPG 287
G+SL+ G RSA SS + ++P PG
Sbjct: 1300 GISLLQTGPSRSALPSSFFTSTPMPG 1325
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = -1
Query: 125 RSKFSALPSLIGR-RL----RHYSLRPQRILLTPPGA 30
R++F PS++ R RL + + RP+RI+ +PPGA
Sbjct: 126 RTRFMRTPSVMDRHRLWTLRKEVAFRPRRIIYSPPGA 162
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 427 EATPAHTGTPATEDPVPHPRLPR 495
E+ HT P TE P+ HP L R
Sbjct: 178 ESPMVHTSLPYTESPIAHPSLIR 200
>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 104 PSLIGRRLRHYSLRPQRILLTPPGASWF 21
P+ G +LR+ S PQ + + PP W+
Sbjct: 4 PNKRGHQLRNLSSNPQGLAIRPPSVLWY 31
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 437 GVASTSSSYRDLLPRIASQIQWHPSADVSE*QSSPRNRQLRPKV 306
G+ S RDL ++A++++ PS +SSPR R ++ V
Sbjct: 33 GLRPRSEEKRDLFLQLANEVKTSPSPVRKRRRSSPRKRHVQATV 76
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +3
Query: 117 LAPMTTSHCVKEKALRYVEN---VSNSRELNLIDGVSLIGQGSPRSARSSSLYPTSPE-- 281
++P+ + H +L V + S R L S SPR +R L PTSP
Sbjct: 272 ISPIASRHSSSSSSLSSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPTSPSYT 331
Query: 282 PGRI 293
PGR+
Sbjct: 332 PGRV 335
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 356 RLPKGAIESAKRSLEEGRG 412
RL KG+IE KR+ E+G+G
Sbjct: 121 RLNKGSIEQGKRATEQGKG 139
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 133 RRIVSRKKLCDTWKMSRILENST*SMASV*SVKAPLDQPGPRAFTRRAQSQGESSRPQTF 312
++ +R + D + S +LE + +V ++ P Q P A R ++ +GE+ +T
Sbjct: 180 KKFSNRTMMSDEYFES-LLEGGAADLPAVETLDCPT-QAVPEAANRDSRREGETRDSRTS 237
Query: 313 GRSCRFLGE-LCHSD 354
G+S +G+ L H D
Sbjct: 238 GKSREMVGKALTHGD 252
>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 292 SSRPQTFGRSCRFLGELCHSDTSAEGCH*ICEAILGRRSR*EEE 423
+++ +T CR L +CH D CH C+A RR R + E
Sbjct: 814 NAKSKTIYLHCRVL--VCHKDDPQSRCHQGCQASERRRRRGQGE 855
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,645
Number of Sequences: 59808
Number of extensions: 402383
Number of successful extensions: 1078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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