Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0978
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 413 YRD---LLPRIASQIQWHPSADVSE*QSSPRNRQLRPK 309
           YRD   LLP I+S + W+P++D+S   S   N    P+
Sbjct: 283 YRDIICLLPYISSSLTWYPASDLSAFWSLHENHSESPE 320


>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 180 SNSRELNLIDGVSLIGQGSPRSARSSSLYPTSPEP 284
           SN+R+ ++ DG   +G   PRS +S    P+ P P
Sbjct: 233 SNTRD-SVWDGSKKLGSRHPRSLKSQRFEPSQPPP 266


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 225 GQGSPRSARSSSLYPTSP-EPGR 290
           G+G P   RSS   PTSP +PGR
Sbjct: 231 GRGRPMQGRSSPKSPTSPTQPGR 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,490
Number of Sequences: 27780
Number of extensions: 277025
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)