Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0978
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   7.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 442 HTGTPATEDPVPHPRLPRNHCL 507
           HTG    E P  H R  R+H L
Sbjct: 4   HTGEKPFECPECHKRFTRDHHL 25


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 454  PATEDPVPHPRLPRNH 501
            P +  P P P  PRNH
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 191 SRIRDIFHVSQSFFLDTMRRCHRSKFSALPSLIGRRLRHYSLR 63
           +R R +F +  S  +  +   H++K       +GR LR+Y  R
Sbjct: 482 NRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALRYYYQR 524


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 222 IGQGSPRSARSSSLYPTSPEP 284
           +    PRS R   L+P  P P
Sbjct: 37  VAMRDPRSNRGPVLFPPGPPP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,285
Number of Sequences: 438
Number of extensions: 3415
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)