Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0978
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   4.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   4.5  
At3g06670.1 68416.m00786 expressed protein                             28   6.0  

>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 ATPAHTGTPATEDPVPHPRLPRNHC 504
           +TP+HT TP T    P P  P  +C
Sbjct: 83  STPSHTPTPHTPSHTPTPHTPPCNC 107


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 ATPAHTGTPATEDPVPHPRLPRNHC 504
           +TP+HT TP T    P P  P  +C
Sbjct: 83  STPSHTPTPHTPSHTPTPHTPPCNC 107


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 77  DEDVFRSVMGVLKTCSD-DNV 136
           D D FR++MGV K C D +NV
Sbjct: 167 DHDFFRNLMGVFKICEDLENV 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,370
Number of Sequences: 28952
Number of extensions: 264790
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)