BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0976 (628 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 32 0.078 SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 5.1 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 6.8 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.8 SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.8 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.0 SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 25 9.0 SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 9.0 SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.0 >SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|Schizosaccharomyces pombe|chr 1|||Manual Length = 512 Score = 31.9 bits (69), Expect = 0.078 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -2 Query: 243 CDNFTCDRYKGQLCSGHGTCVCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSG-NGK 67 CD TC KG LC C +C + C + T C PE C+G + K Sbjct: 341 CDGKTCKLTKGSLCDDQQDACCYQC----HFKNAGTLCRQSTNPCDKPE---FCTGISSK 393 Query: 66 C 64 C Sbjct: 394 C 394 >SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr 1|||Manual Length = 137 Score = 25.8 bits (54), Expect = 5.1 Identities = 7/12 (58%), Positives = 8/12 (66%) Frame = +3 Query: 87 SCCSLATCTLWC 122 SCC TC +WC Sbjct: 25 SCCHCETCRIWC 36 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 25.4 bits (53), Expect = 6.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 138 CQCLKDTKVCMSPENNKICSGNGKCVCGQC 49 CQ KD K +SPE +C + C G C Sbjct: 301 CQISKDLKYRVSPELGNVCFAS--CDLGYC 328 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.4 bits (53), Expect = 6.8 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Frame = -3 Query: 470 EGVSACGVCLCSPGRFGKSCE-CSAQGGVSVEQERGCRPTNATSSPLCSNRGTCICG 303 E CG+ P R+ K CE C GV V + TS C+ + G Sbjct: 945 ESEPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPN----SGLTSHVTCAEKANWYLG 997 >SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 25.4 bits (53), Expect = 6.8 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2 Query: 144 PACQCLKDTKVCMSPENNKICSGNGKCVC 58 P+C C ++ K C S E CS K C Sbjct: 253 PSC-CSQEKKGCCSTEKTSCCSQEKKSCC 280 Score = 25.0 bits (52), Expect = 9.0 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Frame = -2 Query: 228 CDRYKGQLCSGHGTCVC-----GKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKC 64 C + K CS C G CS E +C C ++ K C + E CS Sbjct: 240 CSQEKKSCCSSKKPSCCSQEKKGCCSTEKT----SC-CSQEKKSCCTSEKPSCCSNGKST 294 Query: 63 VC 58 VC Sbjct: 295 VC 296 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 25.0 bits (52), Expect = 9.0 Identities = 19/68 (27%), Positives = 26/68 (38%) Frame = +1 Query: 295 SQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRPGLHRHTPHADTPSP 474 SQ P VP + + ++ + P S + T P S P H P P+P Sbjct: 1483 SQLPPA-VPNVPVPSMIPSVAQQPPSSVAPATAP----SSTLPPSQSSFAHVPSPAPPAP 1537 Query: 475 LHTSGLAL 498 H S AL Sbjct: 1538 QHPSAAAL 1545 >SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 402 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +1 Query: 496 LYAKFPAVHKDSRKSNSNSTL*TVPIYPQGIF 591 ++ FPA+H S ++N T + P YP G + Sbjct: 245 VWQNFPALHLVSPPVHTNFTNGSFPQYPNGTY 276 >SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 25.0 bits (52), Expect = 9.0 Identities = 16/65 (24%), Positives = 27/65 (41%) Frame = +1 Query: 259 DITLVGSSILLHSQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRPGL 438 D T S I + T + PR + ++ L R P S S + +++ + P R Sbjct: 124 DETFNNSPIATPNTTIGVSTPRTDSGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKIF 183 Query: 439 HRHTP 453 H +P Sbjct: 184 HYLSP 188 >SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1087 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 400 AEHSQLFPKRPGLHRHTPHADTPSP 474 A H+ + PKR G RHT T P Sbjct: 233 AYHASMAPKRSGSWRHTNFHSTSHP 257 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,089,733 Number of Sequences: 5004 Number of extensions: 40203 Number of successful extensions: 119 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 119 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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