Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0976
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 32 0.078
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 5.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 6.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.0
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 25 9.0
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 9.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.0
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 31.9 bits (69), Expect = 0.078
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -2
Query: 243 CDNFTCDRYKGQLCSGHGTCVCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSG-NGK 67
CD TC KG LC C +C + C + T C PE C+G + K
Sbjct: 341 CDGKTCKLTKGSLCDDQQDACCYQC----HFKNAGTLCRQSTNPCDKPE---FCTGISSK 393
Query: 66 C 64
C
Sbjct: 394 C 394
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 5.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 87 SCCSLATCTLWC 122
SCC TC +WC
Sbjct: 25 SCCHCETCRIWC 36
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 138 CQCLKDTKVCMSPENNKICSGNGKCVCGQC 49
CQ KD K +SPE +C + C G C
Sbjct: 301 CQISKDLKYRVSPELGNVCFAS--CDLGYC 328
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -3
Query: 470 EGVSACGVCLCSPGRFGKSCE-CSAQGGVSVEQERGCRPTNATSSPLCSNRGTCICG 303
E CG+ P R+ K CE C GV V + TS C+ + G
Sbjct: 945 ESEPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPN----SGLTSHVTCAEKANWYLG 997
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 144 PACQCLKDTKVCMSPENNKICSGNGKCVC 58
P+C C ++ K C S E CS K C
Sbjct: 253 PSC-CSQEKKGCCSTEKTSCCSQEKKSCC 280
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Frame = -2
Query: 228 CDRYKGQLCSGHGTCVC-----GKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKC 64
C + K CS C G CS E +C C ++ K C + E CS
Sbjct: 240 CSQEKKSCCSSKKPSCCSQEKKGCCSTEKT----SC-CSQEKKSCCTSEKPSCCSNGKST 294
Query: 63 VC 58
VC
Sbjct: 295 VC 296
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +1
Query: 295 SQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRPGLHRHTPHADTPSP 474
SQ P VP + + ++ + P S + T P S P H P P+P
Sbjct: 1483 SQLPPA-VPNVPVPSMIPSVAQQPPSSVAPATAP----SSTLPPSQSSFAHVPSPAPPAP 1537
Query: 475 LHTSGLAL 498
H S AL
Sbjct: 1538 QHPSAAAL 1545
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 496 LYAKFPAVHKDSRKSNSNSTL*TVPIYPQGIF 591
++ FPA+H S ++N T + P YP G +
Sbjct: 245 VWQNFPALHLVSPPVHTNFTNGSFPQYPNGTY 276
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +1
Query: 259 DITLVGSSILLHSQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRPGL 438
D T S I + T + PR + ++ L R P S S + +++ + P R
Sbjct: 124 DETFNNSPIATPNTTIGVSTPRTDSGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKIF 183
Query: 439 HRHTP 453
H +P
Sbjct: 184 HYLSP 188
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 400 AEHSQLFPKRPGLHRHTPHADTPSP 474
A H+ + PKR G RHT T P
Sbjct: 233 AYHASMAPKRSGSWRHTNFHSTSHP 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,733
Number of Sequences: 5004
Number of extensions: 40203
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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