Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0976
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 34 0.11
12_02_1279 + 27510605-27513301 32 0.43
10_08_0798 + 20649370-20649428,20649515-20649719 32 0.43
04_04_1322 + 32640414-32642327 31 0.57
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.75
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 30 1.3
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 2.3
06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 29 4.0
10_06_0012 - 9586478-9588880 28 5.3
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 28 5.3
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 28 5.3
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 28 5.3
02_05_0791 + 31773175-31773308,31773403-31773561,31775867-317759... 28 5.3
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 7.0
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 28 7.0
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 28 7.0
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 25 7.7
12_01_1001 - 10145663-10147006 27 9.2
09_06_0144 + 21149338-21150651 27 9.2
07_03_0952 + 22856077-22856185,22856639-22856817 27 9.2
06_02_0210 - 13039479-13039566,13039674-13039770,13040470-130405... 27 9.2
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 27 9.2
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 27 9.2
02_05_0219 + 26870970-26873117 27 9.2
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 27 9.2
02_01_0088 - 627825-628984,629339-629509,629612-630416 27 9.2
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -2
Query: 330 LQPRDLYLWRLRVQQD-GRPH*GNIGPFCECDNFTCDRYKGQLCSGHGTCVCGKCSCEPD 154
+ P D Y +++ +++ + G G FCE C CSGHG C G C C+
Sbjct: 230 VNPEDAYSSKVKFKEECDCKYDGLWGRFCET-RVECSCINQ--CSGHGHCRGGFCQCDGG 286
Query: 153 YGGPAC 136
Y G C
Sbjct: 287 YFGIDC 292
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 479 CSGEGVSACGVCLCSPGRFGKSCECSAQGGVS 384
CSG G G C C G FG C + V+
Sbjct: 270 CSGHGHCRGGFCQCDGGYFGIDCSMPSNYSVA 301
>12_02_1279 + 27510605-27513301
Length = 898
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 443 LCSPGRFGKSCECSAQGGVSVEQERGCRPTNATSSPLCSNRGTC 312
LC+PG G SC C S GC P + ++ PL ++ TC
Sbjct: 320 LCTPGTNGSSCSC--PDAFSTYSTGGCAPADGSALPLLAD--TC 359
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -2
Query: 195 HGTCVCGK-CSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKCVCGQC 49
H TC CG C C P C+C ++++ CS C C C
Sbjct: 32 HTTCSCGDHCGCNP------CRCGRESQPTGRENRRAGCSCGDSCTCASC 75
>04_04_1322 + 32640414-32642327
Length = 637
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 503 AYNASPLVCSGEGVSACGVCLCSPGRFGKSCECSAQGGVSVEQERGCRPTNATSSPLC-S 327
A A+ L S G C C+ G ++ C + GG QE GC + + C +
Sbjct: 245 ARGATGLCISHGGGQRCQKPGCNKGAESRTAYCKSHGGGKRCQELGCTKSAEGKTEFCIA 304
Query: 326 NRGTCICGVCECNK 285
+ G CG C K
Sbjct: 305 HGGGRRCGTPGCTK 318
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 258 GPFCECDNFTCDRYKGQLCSGHGTC-VCGKCSCEPDYGGPACQCLKDTKVCMSPENNKIC 82
G CEC F ++KG G+ C G C ++GG C +T+ + + C
Sbjct: 446 GRVCECPTFNGVQFKG---DGYSNCEPAGPGKCLINHGG----CWHETR---NGKTFSAC 495
Query: 81 --SGNGKCVC 58
SGNGKC C
Sbjct: 496 QESGNGKCQC 505
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -2
Query: 204 CSGHGTCVCGKCSCEPDYGGPACQCLKD 121
C C C +CSC +G C C D
Sbjct: 523 CKEKKACQCPECSCRDTWGDYECTCSGD 550
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 183 VCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKCVCGQCVCNVDDD 28
VCG C Y CLK T++ + +K C C+C C + DDD
Sbjct: 508 VCGHTHCLYKYYH--ISCLKATQIASDKQLDKPCWYCPSCLCRVCHSDRDDD 557
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 364 QPRSCSTDTPPCAEHSQLFPKRPGLHRHTPHADTPSPLHTSGLALYAKFP 513
QP + PP +Q P P LH+H P+ P HT L L P
Sbjct: 722 QPPARPAQQPPRPPVTQPLPPPPPLHQHQPY----QPRHTDALPLPLPLP 767
>06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507
Length = 111
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 243 CDNFTCDRYKGQLCSGHGTCVCGKCSCEPDYGGP----ACQCLKDTKVCMSPENNKI 85
C + +K ++C+ C +C+C P G C C DT V +P N K+
Sbjct: 55 CSGRCANNWKKEMCNKMCNVCCNRCNCVPPGSGQDTRHLCPCY-DTMV--NPHNGKL 108
>10_06_0012 - 9586478-9588880
Length = 800
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 183 VCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKCV 61
+CG S D P C CLK + SP+N + +G C+
Sbjct: 294 ICGPFSVCNDSNNPFCDCLKGFSI-RSPKNWDLEDRSGGCM 333
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 204 CSGHGTCVCGKCSCEPDYGGPACQC 130
C C C CSCE +G C C
Sbjct: 517 CKDKLFCQCKDCSCENTWGSYECSC 541
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -3
Query: 446 CLCSPGRFGKSC-ECSAQGGVSVEQERGCRPTNATSSPLCSNRGTCICGVCE 294
C+ G C EC G ++E + T P C G+ +C VCE
Sbjct: 388 CISCRGEGRLMCVECDGTGEPNIEPQFLEWVGEDTKCPYCEGLGSIVCDVCE 439
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 256 AVLRVR-QLHVRPLQGAAVLGPRHVRVRQVQLRAGLRRARLPVPQGHQ 116
A+LR R QL LQ L + +R RQ Q + A +P PQGH+
Sbjct: 411 ALLRQRAQLEQAALQEQLKLEMQQMRRRQEQRQRARELAIMPQPQGHR 458
>02_05_0791 +
31773175-31773308,31773403-31773561,31775867-31775927,
31776120-31776407
Length = 213
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 519 SQGQSQKQLQLHLVDCPDIPT 581
S QK L+++L+DCPD P+
Sbjct: 176 SDDDKQKTLKINLIDCPDHPS 196
>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Frame = -2
Query: 207 LCSGHGTC--------VCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKCVCGQ 52
LC GTC VCG C Y +CLK +++ + + C C+C
Sbjct: 1088 LCKHCGTCEDDDKRFMVCGHPYCV--YKFYHIRCLKTSQLAIEQQKKLGCWYCPSCLCRG 1145
Query: 51 CVCNVDDDK 25
C + DDD+
Sbjct: 1146 CFQDKDDDQ 1154
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 204 CSGHGTCVCGKCSCEPDYGGPACQC 130
CS C C CSC+ +G C C
Sbjct: 522 CSEKLACSCPHCSCKNTWGSFDCSC 546
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = -2
Query: 204 CSGHGTCVCGKCSCEPDY--GGPACQCLKDTKVCMSPENNKI--CSGNGKCVCGQCVC 43
C G G C +CS P + +P + CSG GK +C C+C
Sbjct: 275 CLGTGYLACARCSSTGTLVLTEPVSTFSDGDQPLSTPRTERCPNCSGAGKVMCPTCLC 332
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 25.4 bits (53), Expect(2) = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 84 CSGNGKCVCGQCVCNVDDDKHYS 16
C GNGKC C + + +H S
Sbjct: 466 CMGNGKCSCEEANSSDGSQRHLS 488
Score = 20.6 bits (41), Expect(2) = 7.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -2
Query: 219 YKGQLCSGHGTCVC 178
+ G C G+G C C
Sbjct: 461 HSGTKCMGNGKCSC 474
>12_01_1001 - 10145663-10147006
Length = 447
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 606 GNNYSKYPLWVYRDSL 559
GN YSK P +VYR+S+
Sbjct: 401 GNRYSKNPFYVYRNSM 416
>09_06_0144 + 21149338-21150651
Length = 437
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 358 GRQPRSCSTDTPPCAEHSQLFPKRPGLHRHTPHADTPSPLHTSG 489
GR R PP H+ LF RP H H + L +G
Sbjct: 167 GRATRGLPMGAPPVHHHAALFKPRPSPHVEHDHRNREYYLPAAG 210
>07_03_0952 + 22856077-22856185,22856639-22856817
Length = 95
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 586 SPVGISGQSTRWSWSCFCDCPCERPGISRTTRVR 485
S V + G RWSWSC C RT+R R
Sbjct: 45 SLVELQGWLLRWSWSCL-SCKLGNDDPQRTSRQR 77
>06_02_0210 -
13039479-13039566,13039674-13039770,13040470-13040545,
13041222-13041356
Length = 131
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 84 CSGNGKCVCGQCVCN-VDDDKHYSGMY 7
C GNG VC QC + V+ H++G +
Sbjct: 67 CEGNGAIVCNQCKGDGVNSVDHFNGRF 93
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = -3
Query: 485 LVCSGEGVSACGVCLCSPGRFGKSCECSAQGGVSVEQERGCRPTNATSSPLCSNRG 318
L S G C CS G G + C GG GC S+PLC G
Sbjct: 446 LCISHGGGRRCQFPDCSKGAQGSTLYCKGHGGGKRCIFDGCSKGAEGSTPLCKAHG 501
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 186 CVCGKCSCEPDYGGPACQC 130
C C CSCE +G C C
Sbjct: 594 CQCKGCSCENTWGSYECSC 612
>02_05_0219 + 26870970-26873117
Length = 715
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 125 LRHWQAGPP*SGSQLHLPHTHVPWPEHSCPL*RSHVKLSHS 247
L H+ PP + +PH P H PL + K HS
Sbjct: 257 LNHYHHQPPNPAATFFMPHPSFPEHNHQSPLLQPPPKRHHS 297
>02_04_0624 +
24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 195 HGTCVCGKCSCEPDYGGPACQCLKDTKVCMSPENNKICSGNGKCVCGQCVCNVDDD 28
H T V G EP Y PA CL +K + N+ NG+ + VC ++DD
Sbjct: 732 HVTKVFGIKKAEPLYNLPAESCLVSSK---TTRTNQSKYHNGQNPLSKEVCVIEDD 784
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -3
Query: 464 VSACGVCLCSPGRFGKSCECSAQGGVSVEQERGCRPTNATSSPLCSNRGTC 312
VS C+ SP G C C+ + E GC+ N SP G C
Sbjct: 234 VSTNSSCINSPNATGYLCACNNGFAGNPYLEGGCQDINECESPGQYCHGIC 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,342
Number of Sequences: 37544
Number of extensions: 332947
Number of successful extensions: 1369
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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