Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0976
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.065
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = +1

Query: 268  LVGSSILLHSQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRPGLHRH 447
            L G  I+L S    + V  +  SG  V L  +QP    T   P    SQL   +  LH  
Sbjct: 1200 LAGKPIVLASGNKNVGVG-VSNSG-SVVLGKQQPSQQQTQQQPIILPSQLLNIKT-LHG- 1255

Query: 448  TPHADTPSPLHTSGLALYAKFPA---VHKDSRKSNSNSTL*TVP 570
                 TP+ L T+G A+YA+  A   +       N   T+ T P
Sbjct: 1256 LKVIPTPAGLKTTGAAVYARVIAPTTITSSQSPGNQQQTIQTQP 1299


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  ILLFSGDMHTLVSLRHW 136
           I+ ++GD+H ++   HW
Sbjct: 104 IIAYTGDVHGVIGAGHW 120


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 81  SGNGKCVCGQCVCNVDDD 28
           SGN  C C  C+  + DD
Sbjct: 101 SGNVYCKCDDCLLGIVDD 118


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 521 TRTVAKATPTPP 556
           T T A ATPTPP
Sbjct: 44  TSTTAAATPTPP 55


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 579 WVYRDSLQGGVGVAFATVL 523
           W++R++    VG+   TVL
Sbjct: 267 WIHREATSDRVGLGITTVL 285


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 228 CDRYKGQLCSGHGTCVC--GKCSCEPDYGGP 142
           C +Y G +   +  C    GK +C+ D GGP
Sbjct: 323 CYKYYGNIMV-NAMCAYAKGKDACQMDSGGP 352


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +1

Query: 265 TLVGSSILLHSQTPQIQVPRLEQSGLEVALVGRQPRSCSTDTPPCAEHSQLFPKRP 432
           T  G+      Q  Q Q  + +QS  +  +VG  P S        A  S     RP
Sbjct: 789 TTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRP 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,728
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)