Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0975
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887     28   5.3  
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    28   7.0  
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788...    27   9.3  
08_02_1316 - 26088302-26088405,26089203-26089317                       27   9.3  
01_01_0137 + 1249081-1249341,1249500-1250237                           27   9.3  

>01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887
          Length = 302

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 77  DPGSEARGWSCGVDCVEVNNKIE 9
           +  S +  W+CGV   EVNN +E
Sbjct: 218 ESSSNSSNWNCGVGAPEVNNALE 240


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 361 HGGRVPQASTRGAASASYSTVGDAAVGTRQRVTRWRRGPLH 239
           +GG V +     AASAS+++     VGTR  + RWR   LH
Sbjct: 40  NGGGVERRLRSSAASASWASHLPLEVGTRV-MCRWRDQKLH 79


>11_02_0059 -
           7883980-7884141,7884423-7884467,7884629-7884715,
           7885746-7885874,7885995-7886151,7886248-7886350,
           7887050-7887103,7887334-7887451,7888549-7888700,
           7890166-7891852
          Length = 897

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 282 PTAASPTVEYDALAAPRVLACGTRPPCC 365
           P  +  T    A  +P VLACG+  P C
Sbjct: 161 PAVSGATPPIHASISPEVLACGSATPAC 188


>08_02_1316 - 26088302-26088405,26089203-26089317
          Length = 72

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 249 PRRQRVTRCRVPTAASPTVEYDALAAPRVLA 341
           P   R   CR   AASP  EY A  A R  A
Sbjct: 3   PPAHRPASCRTSPAASPCCEYSAACAFRATA 33


>01_01_0137 + 1249081-1249341,1249500-1250237
          Length = 332

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 240 CSGPRRQRVTRCRVPTAASPTVEYDALAAPRVLACGTRPPCCRQRFVF 383
           CSG R      CR   A +   E DA+     +AC   P  C    V+
Sbjct: 95  CSGCRGNHGQLCRRAAAYAHCAELDAIVGAAKVACAHAPYGCDSYVVY 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,227
Number of Sequences: 37544
Number of extensions: 223167
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)