Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0975
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)               27   9.5  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   27   9.5  

>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
          Length = 697

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 301 VGDAAVGTRQRVTRWRRGPLHGKL-YIV 221
           VG  + G  Q V  W RGP  GK  YIV
Sbjct: 655 VGSTSCGKIQFVVDWLRGPFRGKFDYIV 682


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = -3

Query: 361 HGGRVPQASTRGAASASYSTVGDAAVGTRQRVTRWRRGPLHGK 233
           H G+   AST GA    +   G   VG   R   W      GK
Sbjct: 608 HRGKAWSASTTGARLGQHQPPGQGLVGINHRGKAWSASTTGGK 650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,375
Number of Sequences: 59808
Number of extensions: 270812
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)