Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0974
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.72 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   1.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   3.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   6.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.8  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.8  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 427 FYLDFIWTLCFSLNSRLILVTTNDSSIRSQNSRLADKLYELRRLLHM 567
           FY +FI  +  S + R+  + T D  +RS   +L  K + L    H+
Sbjct: 458 FYKEFISNISMSDDGRIYFMNTRDIKVRSLVVKLKHKYWHLSSGFHL 504


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 337 LSLKANRDFLSSIKKKT---LVLCVVLITIFLNF 429
           LS K   DFL S+KK +   L++ +V +TI L+F
Sbjct: 5   LSFKPAEDFLRSLKKSSQWFLLIIIVEVTITLSF 38


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 478 ILVTTNDSSIRSQNSRLADKLYELR 552
           +LVTTNDS IR  N  L DK  EL+
Sbjct: 463 MLVTTNDSRIRIYN--LRDKSLELK 485


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 280 PTPAQSIKTSPH*NRFR 230
           PTPA  +KTSPH   +R
Sbjct: 330 PTPAPPVKTSPHPASYR 346


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 424 NFYLDFIWTLCFSLNSRLILVTTNDSSIRSQNSRLADKLYELRR 555
           N +  F W   F     L+  T ND  ++ +++ + +  YEL++
Sbjct: 799 NEFRTFPWAKLFFNLRPLLSSTQNDKQLKKRDAEIIELKYELKK 842


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 326 CEFCETKCKIKTLIR 282
           C +CE KCK K L++
Sbjct: 61  CPYCEIKCKRKDLLK 75


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  LVGDFWKIHFNYNTRKRRSSCKLTSASVRRD 152
           L   F K+   YNT+ +R S   ++ +V+RD
Sbjct: 623 LKDSFTKLDIQYNTKYKRISRNRSTKNVKRD 653


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 364 LSSIKKKTLV-LCVVLITIFLNFYL 435
           L S+K +T++  CV++ T F+++Y+
Sbjct: 344 LKSLKDRTILGSCVLIFTYFMSYYI 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,361
Number of Sequences: 5004
Number of extensions: 40508
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)