Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0974
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0473 - 34181212-34181430,34181512-34181735,34181812-341819...    31   0.74 
11_01_0459 + 3546101-3548771,3548871-3549238                           29   2.3  
09_06_0095 + 20833313-20835073                                         29   3.9  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           27   9.1  
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600...    27   9.1  

>03_06_0473 -
           34181212-34181430,34181512-34181735,34181812-34181973,
           34182071-34182167
          Length = 233

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 4   PPVARPPGLG*VRFFGSK--RSLAIFGKYILTTILG 105
           PPVARPPG G   F      R + I G +I  T +G
Sbjct: 15  PPVARPPGSGHAHFLAGAGVRGVEIAGNFIKFTAIG 50


>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 374 IEDKKSRFAFNESQYFCEFCETKCKIKTLIRPDS 273
           ++ +++  ++N+S YFC +    C++KT  RP S
Sbjct: 45  LDPQQALMSWNDSTYFCSWEGVLCRVKTPHRPIS 78


>09_06_0095 + 20833313-20835073
          Length = 586

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 294 NFNTARLLRSRSKPRHIKIDLEKIVYYN 211
           N  TAR+L+    P HI++DL++  Y N
Sbjct: 270 NQQTARILKRYDLPEHIRLDLQEQHYNN 297


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 374 IEDKKSRFAFNESQYFCEFCETKCKIKT 291
           ++ +++  ++N+S YFC +    C++KT
Sbjct: 45  MDPQQALMSWNDSNYFCSWEGVSCRVKT 72


>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
            18760190-18760309,18760457-18760521,18760684-18760828,
            18761304-18763337,18763904-18764025,18764127-18764309,
            18764635-18764690,18765086-18765141
          Length = 1044

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 442  IWTLCFSLNSRLILVTTNDSSIRSQNSRLADKLYELRRLLHMTH*VKQSKWWTSQD 609
            I +L F  ++  IL++TNDS    +   LA ++ +LRR L     VKQ+   + +D
Sbjct: 856  IRSLKFEYDNLKILMSTNDS----EKHNLASQVLKLRRALESREDVKQNGVKSDED 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,728
Number of Sequences: 37544
Number of extensions: 243407
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)