Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0974
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7)              29   3.0  
SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)              29   3.0  
SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)                   27   9.3  

>SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7)
          Length = 295

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 495 RLFNSFPKLKIGGQTV*ITSPFTHDSLSETVKMVDKSRRQPT 620
           R++   P  ++GG  +    PF HD   +    +D  RR  T
Sbjct: 44  RMYTGIPAFQVGGSFLPYDDPFKHDESPDAKSCLDYLRRGQT 85


>SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)
          Length = 308

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 495 RLFNSFPKLKIGGQTV*ITSPFTHDSLSETVKMVDKSRRQPT 620
           R++   P  ++GG  +    PF HD   +    +D  RR  T
Sbjct: 61  RMYTGIPAFQVGGSFLPYDDPFKHDESPDAKSCLDYLRRGQT 102


>SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)
          Length = 541

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 515 WERIEESL-VVTRIKREFSEKHNVQI 441
           W + EES+ V+T +K+ +S K+N  +
Sbjct: 212 WVKTEESIPVITSVKQRYSRKYNADV 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,839
Number of Sequences: 59808
Number of extensions: 285586
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)