Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0974
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC043406-1|AAH43406.1| 583|Homo sapiens NudC domain containing ... 30 7.6
BC031258-1|AAH31258.1| 496|Homo sapiens NUDCD1 protein protein. 30 7.6
BC000967-1|AAH00967.2| 583|Homo sapiens NudC domain containing ... 30 7.6
AL832317-1|CAD38612.1| 389|Homo sapiens hypothetical protein pr... 30 7.6
AK027897-1|BAB55439.1| 583|Homo sapiens protein ( Homo sapiens ... 30 7.6
AF521133-1|AAQ08823.1| 554|Homo sapiens tumor antigen CML66 sho... 30 7.6
AF283302-1|AAM69373.1| 554|Homo sapiens chronic myelogenous leu... 30 7.6
AF283301-1|AAK73017.1| 583|Homo sapiens chronic myelogenous leu... 30 7.6
>BC043406-1|AAH43406.1| 583|Homo sapiens NudC domain containing 1
protein.
Length = 583
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 270 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 329
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 330 DHESSTWIIKES 341
>BC031258-1|AAH31258.1| 496|Homo sapiens NUDCD1 protein protein.
Length = 496
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 183 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 242
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 243 DHESSTWIIKES 254
>BC000967-1|AAH00967.2| 583|Homo sapiens NudC domain containing 1
protein.
Length = 583
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 270 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 329
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 330 DHESSTWIIKES 341
>AL832317-1|CAD38612.1| 389|Homo sapiens hypothetical protein
protein.
Length = 389
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 76 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 135
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 136 DHESSTWIIKES 147
>AK027897-1|BAB55439.1| 583|Homo sapiens protein ( Homo sapiens
cDNA FLJ14991 fis, clone Y79AA1001781. ).
Length = 583
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 270 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 329
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 330 DHESSTWIIKES 341
>AF521133-1|AAQ08823.1| 554|Homo sapiens tumor antigen CML66 short
form protein.
Length = 554
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 241 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 300
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 301 DHESSTWIIKES 312
>AF283302-1|AAM69373.1| 554|Homo sapiens chronic myelogenous
leukemia tumor antigen 66 short form protein.
Length = 554
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 241 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 300
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 301 DHESSTWIIKES 312
>AF283301-1|AAK73017.1| 583|Homo sapiens chronic myelogenous
leukemia tumor antigen 66 protein.
Length = 583
Score = 29.9 bits (64), Expect = 7.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 545 SYSLSANLEFWERIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQ--STKVFFLI 372
S + L +W++ E+ L VT E S K ++QI IV+ Q K++ I
Sbjct: 270 SEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSI 329
Query: 371 EDKKSRFAFNES 336
+ + S + ES
Sbjct: 330 DHESSTWIIKES 341
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,867,316
Number of Sequences: 237096
Number of extensions: 1225754
Number of successful extensions: 2984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2984
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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