Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0974
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine re...    30   1.5  
Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z27079-3|CAA81590.1|  332|Caenorhabditis elegans Hypothetical pr...    28   4.7  
X68384-1|CAA48455.1|  332|Caenorhabditis elegans protein ( C.ele...    28   4.7  
S75262-1|AAC60520.1|  332|Caenorhabditis elegans p34cdc2 kinase ...    28   4.7  
AF129109-1|AAD37119.1|  332|Caenorhabditis elegans CDK1 ortholog...    28   4.7  
AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lecti...    28   6.2  
Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 2 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 349 ANRDFLSSIKKKTLVLCVVLITIFLNFYLDFIWTLCFSLNSRLILVTTNDS 501
           A   FL ++   T  LC+  I   LNF    I       NS+ I VT N S
Sbjct: 15  ATSSFLRTVLSTTTFLCICCIPFCLNFAWLIIHETRLHFNSKCIFVTFNIS 65


>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 500 ESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQSTKVFFLIEDKKSRFAFNESQYFCE 321
           + L V  IK  F++KH  ++        +  N+T    +FF I  K +R      +   E
Sbjct: 745 KKLTVANIK--FTKKHYHELEHLAVLESVKCNSTAMKTLFFSIRSKNARGKIIVDKALNE 802

Query: 320 FCETK 306
           FC+ K
Sbjct: 803 FCDGK 807


>Z27079-3|CAA81590.1|  332|Caenorhabditis elegans Hypothetical
           protein T05G5.3 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 193 RAGRDAFRVLYSKKSRRTDALVSLQEDRL 107
           + G   + V+Y  K+RRT+A+V++++ RL
Sbjct: 27  KIGEGTYGVVYKGKNRRTNAMVAMKKIRL 55


>X68384-1|CAA48455.1|  332|Caenorhabditis elegans protein (
           C.elegans mRNA for p34cdc2 homologue. ).
          Length = 332

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 193 RAGRDAFRVLYSKKSRRTDALVSLQEDRL 107
           + G   + V+Y  K+RRT+A+V++++ RL
Sbjct: 27  KIGEGTYGVVYKGKNRRTNAMVAMKKIRL 55


>S75262-1|AAC60520.1|  332|Caenorhabditis elegans p34cdc2 kinase
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 193 RAGRDAFRVLYSKKSRRTDALVSLQEDRL 107
           + G   + V+Y  K+RRT+A+V++++ RL
Sbjct: 27  KIGEGTYGVVYKGKNRRTNAMVAMKKIRL 55


>AF129109-1|AAD37119.1|  332|Caenorhabditis elegans CDK1 ortholog
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 193 RAGRDAFRVLYSKKSRRTDALVSLQEDRL 107
           + G   + V+Y  K+RRT+A+V++++ RL
Sbjct: 27  KIGEGTYGVVYKGKNRRTNAMVAMKKIRL 55


>AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lectin
           protein 85 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 439 FIWTLCFSLNSRLILVTTNDSSIRSQNSRLA 531
           +I  LC+S++++L+  T   S+  SQN  LA
Sbjct: 25  YIGDLCYSISAQLLKFTDAQSACYSQNQNLA 55


>Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical
           protein F54D5.2 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 LDFIWTLCFSLNSRLILVTTNDSSIRSQNSRLADKLY 543
           LD++W+ CF L  RL LV    +     +S     LY
Sbjct: 257 LDYLWSRCFWLGQRLCLVGMRSTEEAPVSSAYLYSLY 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,156
Number of Sequences: 27780
Number of extensions: 227532
Number of successful extensions: 682
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)