Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0974
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.7  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 355 GSLLMKVNIFVNSVKRNAKLKL*Y 284
           G  +++VN+FV S+   + +K+ Y
Sbjct: 57  GPAIVRVNLFVRSIATISDIKMEY 80


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 IKKKTLVLCVVLITIFLNFYLDF 441
           I KKT+   + ++ +FL F++ F
Sbjct: 222 ILKKTVCFVIPIMLLFLAFFVSF 244


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 344 NESQYFCEFCETKCKIK 294
           +++ Y CEFC  + + K
Sbjct: 32  SDTLYVCEFCNRRYRTK 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,536
Number of Sequences: 438
Number of extensions: 3083
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)