Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0973
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           26   0.30 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   0.53 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   0.53 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.9  
AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    21   6.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.6  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 271 DRLEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEENN 408
           D+ +   PA  A      A       YEN  + +YD  N S EEN+
Sbjct: 117 DKKDDDSPALRALLTRPQAKKTPPNQYEN--FQQYDNNNFSAEENS 160



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 389 PQSKKTIHNQKQNHHPVD 442
           PQ+KKT  NQ +N    D
Sbjct: 133 PQAKKTPPNQYENFQQYD 150


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 271 DRLEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEENN 408
           D+     PA  A      A       YEN  + +YD  N S EEN+
Sbjct: 117 DKKNDDSPALRALLTRPQAKKTPPNQYEN--FQQYDNNNFSAEENS 160



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 389 PQSKKTIHNQKQNHHPVD 442
           PQ+KKT  NQ +N    D
Sbjct: 133 PQAKKTPPNQYENFQQYD 150


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 271 DRLEPRMPAAYAPRNVQTAHNVAETDYENASYHEYDEENASIEENN 408
           D+     PA  A      A       YEN  + +YD  N S EEN+
Sbjct: 117 DKKNDDSPALRALLTRPQAKKTPPNQYEN--FQQYDNNNFSAEENS 160



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 389 PQSKKTIHNQKQNHHPVD 442
           PQ+KKT  NQ +N    D
Sbjct: 133 PQAKKTPPNQYENFQQYD 150


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 45  GINGNSPAVLTKAVLQQ-GGSSEEIISAFASTTDVSTRR 158
           G++G    +L KA+ Q  GGSS EI+       +  T++
Sbjct: 366 GVSGTKYPIL-KAIHQTLGGSSNEIVEPVPQPVEEVTQK 403


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 309  RCVCGRHPRFESV 271
            RC CG+HP  +++
Sbjct: 2671 RCGCGKHPLLKTL 2683


>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 277 LEPRMPAAYAPRNVQTAHNVAETDYE 354
           L+P M   +AP N+ T     E  +E
Sbjct: 23  LKPGMVVVFAPANITTEVKSVEMHHE 48


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 79  KQSYNKVAALKK*FQLLQV 135
           K +Y KV  LKK F  L+V
Sbjct: 83  KDNYRKVTDLKKRFPKLKV 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,820
Number of Sequences: 336
Number of extensions: 2183
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)