BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0973 (637 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 6.9 SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 6.9 >SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pombe|chr 1|||Manual Length = 414 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 85 SYNKVAALKK*FQLLQVPRMCLHGDS 162 S+ V LKK F Q+P+ CL DS Sbjct: 31 SFEAVGQLKKSFYKRQLPKQCLAFDS 56 >SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 965 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 218 SVVFAPLLSPSGHLGPQLPESPCRHIRGT 132 S+ APL+SP L P S RH+ T Sbjct: 189 SLEIAPLISPESQLSSLHPSSSRRHLIST 217 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,141,057 Number of Sequences: 5004 Number of extensions: 36410 Number of successful extensions: 106 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -