Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0973
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783...    28   7.1  
05_01_0248 - 1864092-1864204,1864570-1864608,1864661-1864730,186...    28   7.1  
07_01_0833 - 6778002-6778448                                           27   9.4  
02_02_0283 + 8542344-8542604                                           27   9.4  

>07_03_0724 +
           20975942-20976867,20977397-20977476,20977976-20978370,
           20988410-20989444
          Length = 811

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 242 LASALQRALATDSNRGCLPHTHRGMYKPHTT*QRLTTKMRHITNMT-KKMPQSKKTIHNQ 418
           ++ + ++ +A   +R  LP T  G +      +R     RH TN T + MP    T    
Sbjct: 469 VSKSWRKLIADHEHRKKLPQTLSGFFYKSIDYERCPHMARHFTNATGRGMPLVCPTFSFL 528

Query: 419 KQNHHPV 439
            Q HH V
Sbjct: 529 PQCHHVV 535


>05_01_0248 -
           1864092-1864204,1864570-1864608,1864661-1864730,
           1864976-1865043,1866114-1866201,1866282-1866309,
           1866406-1866451,1866571-1866796
          Length = 225

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 HCSALWRPTRTADACRIRTAECTNRTQR 335
           HCS L++    +D  RIRT E   R +R
Sbjct: 182 HCSPLYQMIPVSDVIRIRTGERGERAER 209


>07_01_0833 - 6778002-6778448
          Length = 148

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +2

Query: 197 AAGRTLLSNAVLLVMLASALQRALATDSNRGCLPHTHRGMYKPH 328
           A+   LLS AVLL +LA A   A A+ +   C P    GM  PH
Sbjct: 2   ASKNLLLSAAVLLSVLAIAAAAATASAATTSCQP----GMAIPH 41


>02_02_0283 + 8542344-8542604
          Length = 86

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 199 CCRHQATWALSCQNLRVDTSVVLAKAEIISSELPPCCKTA 80
           CCR++  + L C +L +  S+    AE+++    P    A
Sbjct: 11  CCRNRTPFRLHCASLPLSLSLTAPAAELLTVATSPAAVAA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,260
Number of Sequences: 37544
Number of extensions: 274758
Number of successful extensions: 820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)